PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g045040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 331aa    MW: 36785.5 Da    PI: 4.5459
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g045040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.12e-102552951055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+RR+riN+++  L+ l+P+      +K++ +++Le+Av+Y+k Lq
  Csa19g045040.1 255 RKRRERINERLRILQNLVPNG-----TKVDISTMLEEAVQYVKFLQ 295
                     9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.148245294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-14246311IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.5E-12250304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-11251300IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.16E-11254299No hitNo description
PfamPF000101.0E-7255295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEAMGEWTTG LGGMYTEEAD FMNQLLASYE QPCGGSSSET TATLAAYHHG QGSQWTGGFC  60
FSQESSSYSG YCTVVPQQEE DDNRMEDSTI NTDLYLVGEE TCECDVAEYS RKGLWPLENA  120
EESHDHSVLQ SENSLTTTTT DEKLLRPCES SKKRMRATST DKNKRANKMR RRQKGVEMSG  180
DNDNSGEEED TEKAAGERKT KPSKPQSTCC SDDESNGGDT FLSKEDGEDS KALNLNGKTR  240
ASRGAATDPQ SLYARKRRER INERLRILQN LVPNGTKVDI STMLEEAVQY VKFLQLQIKL  300
LSSDDLWMYA PIAYNGMDIG LDLKLNALTR *
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g045040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5775840.0AJ577584.1 Arabidopsis thaliana mRNA for putative bHLH084 transcription factor (bHLH084 gene).
GenBankDQ4464970.0DQ446497.1 Arabidopsis thaliana clone pENTR221-At2g14760 basic helix-loop-helix protein/bHLH protein (At2g14760) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488914.10.0PREDICTED: transcription factor bHLH84-like
SwissprotQ7XHI90.0BH084_ARATH; Transcription factor bHLH84
TrEMBLD7L2Q60.0D7L2Q6_ARALL; Basic helix-loop-helix protein
STRINGXP_010488914.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28342663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.10.0bHLH family protein