PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g036820.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Trihelix
Protein Properties Length: 307aa    MW: 34517.6 Da    PI: 10.1772
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g036820.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix73.53.7e-2367147286
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     Wt++e+l+Lie  +e++++++rg lk ++Wee++ ++ ++ g+ rs++qC++k+e+l+kr++ ++++++       s +p+++q+e
  Csa19g036820.1  67 WTHDETLLLIESFKEKWDAIGRGPLKSNHWEEIAVAVsARSGVDRSATQCRHKIEKLRKRFRSERQSMGPI-----SIWPFYNQME 147
                     ***********************************998899****************************84.....68*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.1E-2067149No hitNo description
PROSITE profilePS500906.64467124IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MATPSPTSSP PSDSNPNSAA TPPHQIQQQP SPPQPTDPSS PPPSHSTVIA LAATTSSVAR  60
KTQPVLWTHD ETLLLIESFK EKWDAIGRGP LKSNHWEEIA VAVSARSGVD RSATQCRHKI  120
EKLRKRFRSE RQSMGPISIW PFYNQMEEMD SNPAPISARP LTRLPPNSNN NYQDDEEEDQ  180
EEEEEDERQS KSRSINYILR RPGTVNRFAG VGGGLLSWGQ RERSSKRKRN KDGGDGGERR  240
RKGARAVAAE IRAFAERVMV MEKKKMEFAK ETVRLRKEME IRRINLIQTS QAQLLQFLNS  300
SFDSSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1226241RKRNKDGGDGGERRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g036820.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0286091e-168AB028609.2 Arabidopsis thaliana genomic DNA, chromosome 3, TAC clone:K7P8.
GenBankAK1181571e-168AK118157.1 Arabidopsis thaliana At3g24860 mRNA for unknown protein, complete cds, clone: RAFL19-47-G19.
GenBankBT0054911e-168BT005491.1 Arabidopsis thaliana clone U50805 unknown protein (At3g24860) mRNA, complete cds.
GenBankCP0026861e-168CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488601.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLR0I4461e-173R0I446_9BRAS; Uncharacterized protein
STRINGXP_010488601.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102812232
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24860.11e-128Trihelix family protein