PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g031290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 288aa    MW: 32163.4 Da    PI: 6.608
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g031290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-091752151055
                     HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+ R++i +++ +L +l+P+      +K+s a+iLe+A +YIk Lq
  Csa19g031290.1 175 RNKRKKISNKIRTLEKLMPWE-----RKMSLAAILEEAHKYIKFLQ 215
                     777*****************9.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.62165214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-10171222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-5171220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-9175221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-7175215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-6175219No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MESSAYEFDS LTDLPPLPEE YKPTVVDYSR SFDSLPPFPP SDFTFSDHYL DSSLSLSDSL  60
FLDSTLSLLN RHHLSESPRL DQNLFYEPIR FDQLFPNNDS SAAAPFLHLP DLKSIEQTTT  120
TAVEEPTLTT MKLFPSLSPP PAAKRHKKLH SSTNSSTTSG SPTASSSHNT NDGGRNKRKK  180
ISNKIRTLEK LMPWERKMSL AAILEEAHKY IKFLQAQIAS LLWMPLESVY NTVGEVGESD  240
LLKSLTRQQI LQVLANSPGS RNVLSTHGLC VFSYEQLLTL KAMTRNL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g031290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010488223.10.0PREDICTED: transcription factor bHLH117-like
SwissprotQ9LRJ41e-106BH117_ARATH; Transcription factor bHLH117
TrEMBLR0GAQ11e-123R0GAQ1_9BRAS; Uncharacterized protein
STRINGXP_010488223.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133992228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22100.19e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]