PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g029310.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

Dof

Protein Properties

Length: 309aa MW: 34121.1 Da PI: 9.2971

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g029310.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.1	1e-39	22	81	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++lkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGGalrnvPvGgg+rkn ++ Csa19g029310.1 22 EQEQLKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNVPVGGGSRKNATK 81 5789****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.9E-33	24	80	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	6.0E-23	26	74	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.32	26	80	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	28	64	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MQDPAAYYQT MMAKQQQPQF AEQEQLKCPR CDSLNTKFCY YNNYNLSQPR HFCKNCRRYW 60 TKGGALRNVP VGGGSRKNAT KRSTTSSSSS PPSSNTNKKT KTPDPDLEPR NQQNPELDPT 120 RMLYGFPIGD QDVKGMEIGG SFSSLLASNM QLGLGGGIML DGSGWDHPGM GMGLGLRRLN 180 REVSRRRTFL FDYVPYLLXP PSSNTNKKTK NPDPDLDPRN QQNPELDPTR MLYGFPIGDQ 240 DVKGMEIGGS FSSLLASNMQ FGLGGGIMLD GSGWDHPGMG MGLGLRRSEP GSNNNPWTDL 300 AMNRVEKN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g029310.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB017565	1e-152	AB017565.1 Arabidopsis thaliana adof2 mRNA for Dof zinc finger protein, complete cds.
GenBank	AB023045	1e-152	AB023045.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MXL8.
GenBank	AY150391	1e-152	AY150391.1 Arabidopsis thaliana Dof zinc finger protein (At3g21270) mRNA, complete cds.
GenBank	CP002686	1e-152	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010488133.1	1e-116	PREDICTED: dof zinc finger protein DOF3.1-like isoform X1
Swissprot	Q94AR6	6e-86	DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBL	D7L0R0	1e-101	D7L0R0_ARALL; Uncharacterized protein
STRING	XP_010466363.1	1e-114	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1269	28	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21270.1	4e-64	DOF zinc finger protein 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]