PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g027040.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 279aa    MW: 29749.1 Da    PI: 5.8081
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g027040.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.80.000111581971155
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      R +r+ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Csa19g027040.1 158 VRKERLGERIAALQQLVSPY-----GKTDAASVLHEAMGYIKFLQ 197
                     57788899*********999.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.331147196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.38E-4157201No hitNo description
SuperFamilySSF474597.33E-11157208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-6157203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGDNSAEDHD DLALVEAEGV TSFSELLMFS DGVLSSSDHQ RESSSGGDGG EDSLGFVFSG  60
KTGSRMLCFS GGYQNDDASL FLEPSSLPSS GVPVLDPSCI KIDDCKNFKD ACTVDKSTKP  120
SNKKRTGTGN EHEPDQNRQP GKKCKRNQDK SSLGTVKVRK ERLGERIAAL QQLVSPYGKT  180
DAASVLHEAM GYIKFLQDQI QVLCSPYLIN HTLADGGVVT GDVMAAMKAK DLRSRGLCLV  240
PVSSTVHVEN SNGADFWSPA TMGHTTTTSP STLHHQGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g027040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0845200.0AY084520.1 Arabidopsis thaliana clone 110428 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487895.10.0PREDICTED: transcription factor bHLH113
SwissprotQ9LT671e-161BH113_ARATH; Transcription factor bHLH113
TrEMBLD7L9Z71e-160D7L9Z7_ARALL; Uncharacterized protein
STRINGXP_010487895.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74022234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.11e-140bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]