PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g025240.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 352aa    MW: 40177.6 Da    PI: 6.8339
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g025240.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.4e-2175134357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++t++ql++Leel+ + +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Csa19g025240.1  75 SRWNPTPDQLRVLEELYGQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 134
                     7*****************99**************************************97 PP
2Wus_type_Homeobox116.41.4e-3774136365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+Ptp+Q+++Leely +G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
     Csa19g025240.1  74 SSRWNPTPDQLRVLEELYGQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 136
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003891.9E-572139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.8E-975134IPR009057Homeodomain-like
SuperFamilySSF466897.48E-1275140IPR009057Homeodomain-like
PfamPF000464.3E-1975134IPR001356Homeobox domain
CDDcd000861.18E-576136No hitNo description
PROSITE profilePS5007110.5680135IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MWTMGYNEGG ADSFNGGRKL RPLIPRLSSC PTASPNTNSD HRFNMAVMTM TAEQNKRELM  60
MLNSEPQHPP VMVSSRWNPT PDQLRVLEEL YGQGTRTPSA DHIQQITAQL RRYGKIEGKN  120
VFYWFQNHKA RERQKRRRQM ETGHEDSVLN TTSLVSNHGF DKKDPPGYKV EQAKNWICSV  180
GCDTQPEKPS LDDHQEEAWN IRVERNGRCG GDERRSFLGR NVTWQMMQLP PGLYPSSHHQ  240
QRNLILNSTN VSSNMISTSN VNTVSAAKDS VTFSPVLLST REATNAETCR RNYDDNKGQE  300
RHEECSNGDS DHEEHTLELF PLTKEGFCSD DEKEKEISGI HCFYEFLPLK N*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g025240.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2513940.0AY251394.1 Arabidopsis thaliana WOX1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487711.10.0PREDICTED: WUSCHEL-related homeobox 1-like isoform X1
SwissprotQ6X7K00.0WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLD7L7Y50.0D7L7Y5_ARALL; WOX1 protein
STRINGXP_010487711.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.10.0WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]