PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g023230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB_related
Protein Properties Length: 386aa    MW: 41251.8 Da    PI: 8.595
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g023230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.92.3e-13131175347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++ + ++lG+g+W+ I+r   + Rt+ q+ s+ qky
   Csa19g023230.1 131 PWTEEEHRLFLVGLQKLGKGDWRGISRNYVTSRTPTQVASHAQKY 175
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512576134No hitNo description
Gene3DG3DSA:4.10.60.108.3E-4222IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.516124180IPR017930Myb domain
SuperFamilySSF466898.97E-17126180IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17127178IPR006447Myb domain, plants
SMARTSM007171.5E-9128178IPR001005SANT/Myb domain
PfamPF002498.7E-11131175IPR001005SANT/Myb domain
CDDcd001673.30E-9131176No hitNo description
Gene3DG3DSA:1.10.10.601.2E-10131174IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPT RGTCGGGGGG GGSCSSSAVK LFGVRLTDGS IIKKSASMGN  60
LSALAVAAAA ATTHHRLSPS SPLATSNHND SPLSDHARYS GLHHNEGYLS DDPAHGSGSS  120
HRRGERKRGI PWTEEEHRLF LVGLQKLGKG DWRGISRNYV TSRTPTQVAS HAQKYFIRHT  180
SSSRRKRRSS LFDMVTDEMV TDSSPIQEDQ TVNRSSPSEE LENKSYLPSL ELSLNNTTEP  240
EAVIAKALPQ EKPEEAIEPS NGVSPMLVPG GFYPPCFPVT YTIWLPATST SLQGTEHGFE  300
AETSSQHHQV LKPKPGFAKE RVNMDELVGM SQLSIGMGTK HGTETSPSAS PLSLKLEPSR  360
PSAFHSNGSV NGADLSKGNS AIQAI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g023230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0058320.0BT005832.1 Arabidopsis thaliana At3g16350 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010487491.10.0PREDICTED: uncharacterized protein LOC104765474
TrEMBLR0HYV30.0R0HYV3_9BRAS; Uncharacterized protein
STRINGXP_010487491.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93132735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.10.0MYB_related family protein