PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g015200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MYB_related | ||||||||
Protein Properties | Length: 223aa MW: 25399.4 Da PI: 10.3224 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.1 | 1.3e-15 | 27 | 71 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r ++T++E+ +++ +++lG++ W+ Ia+ ++ +Rt+ ++k++w++ Csa19g015200.1 27 RSKFTPQEENEIIKFHALLGNR-WAVIAKQIP-NRTDHDIKNHWNSC 71 789*******************.*********.***********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.17 | 1 | 21 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 5.5E-10 | 7 | 33 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.26E-21 | 7 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.472 | 22 | 76 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-14 | 26 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.6E-15 | 27 | 71 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.11E-10 | 29 | 69 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.4E-19 | 34 | 76 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MHKKGLQRCR RSCRLRWMNY LRPGIKRSKF TPQEENEIIK FHALLGNRWA VIAKQIPNRT 60 DHDIKNHWNS CLKKRLAKQR IDPMTHEPTF LTVDEATSYP ITLPSPTPST SSSSSSFSST 120 GSARLLNKLA AGIASRKYRL DRIKMVILSE QPREASDKEK MLITMDEKDL IACFMDIDEK 180 LSRASFLVSA CWTDCSVMAA LLVCDRSNSN AQTLRNSKQF AY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-19 | 2 | 76 | 36 | 108 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g015200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019101180.1 | 1e-109 | PREDICTED: transcription factor MYB80-like | ||||
TrEMBL | R0I0D0 | 1e-101 | R0I0D0_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.1655s0054.1.p | 1e-103 | (Capsella grandiflora) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74430.1 | 7e-79 | myb domain protein 95 |