PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g014250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 422aa    MW: 48993.7 Da    PI: 6.9181
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g014250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.13.6e-1294139247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+  ++++ +++G g+Wk I+r+  k +++ q+ s+ qky
   Csa19g014250.1  94 NPWTEEEQRSFLEGLEKFGRGDWKNISRECVKSKSPTQVASHAQKY 139
                      69*******************************************9 PP
2Myb_DNA-binding26.81.2e-083013371147
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      l++d+  ++G+g+Wk+I+r+  k+R++ q+ s+ qky
   Csa19g014250.1 301 LFLDGLDKYGKGDWKSISRECVKTRSPMQVASHAQKY 337
                      79**********************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007174.4355IPR001005SANT/Myb domain
PROSITE profilePS5129415.27188144IPR017930Myb domain
SuperFamilySSF466892.87E-1591144IPR009057Homeodomain-like
SMARTSM007171.2E-992142IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-992138IPR009057Homeodomain-like
TIGRFAMsTIGR015576.1E-1694143IPR006447Myb domain, plants
PfamPF002491.1E-994139IPR001005SANT/Myb domain
CDDcd001679.50E-995140No hitNo description
SMARTSM007176.7180231IPR001005SANT/Myb domain
SuperFamilySSF466894.76E-5183233IPR009057Homeodomain-like
PROSITE profilePS512949.524266342IPR017930Myb domain
SuperFamilySSF466896.28E-11267342IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-7268338IPR009057Homeodomain-like
SMARTSM007170.31270340IPR001005SANT/Myb domain
CDDcd001676.52E-6273337No hitNo description
TIGRFAMsTIGR015574.0E-9300341IPR006447Myb domain, plants
PfamPF002492.0E-5301337IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MTSSPSWSRY DDKRFEKALN QYRDESSPFF YQNIAGSVNK PVNEVYYYYQ ALVDDVALIQ  60
SSNFDLPRYR EDDYKSLKEV TQSNNQVKEK AKGNPWTEEE QRSFLEGLEK FGRGDWKNIS  120
RECVKSKSPT QVASHAQKYF LRQEGSERKK GKRSSIHDRT LGDMRPPTVL ESWFLDTMVS  180
IPWWTKEDNK NFEIALAQFP EGSPSFLERI AEHLRKPVEE VKFYYEDLVY DVEQIETGKV  240
PLPKYRDDDD DYVSLKKAAE SKSQGTGRKK GIPWTPEEHR LVLHLSIRLW TLVDLTINFR  300
LFLDGLDKYG KGDWKSISRE CVKTRSPMQV ASHAQKYYLR QSSDGKKGKR SSIHDMTLGH  360
ADNVTVPGSN LKSMGHQPHF GDQIPPDQYY QYYSQDNFGL FDDDAHGGCL PSYDELYSYK  420
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g014250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0115606e-79AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence.
GenBankATAC0134286e-79AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence.
GenBankCP0026866e-79CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010486671.11e-161PREDICTED: transcription factor DIVARICATA-like
TrEMBLR0I6331e-101R0I633_9BRAS; Uncharacterized protein
STRINGXP_010486671.11e-161(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14731719
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10580.22e-82MYB_related family protein