PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g014110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 451aa MW: 50950.8 Da PI: 6.2906 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 170 | 7.5e-53 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatgkd+e+ Csa19g014110.1 27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATGKDREIR 120 579************************999.99**************8544899999************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + + +l g+kktLvf++grap+g +t+Wvmheyrl Csa19g014110.1 121 R-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.02E-61 | 20 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.442 | 27 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.4E-27 | 29 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MGRESLAAVS SPPSATAPST AVSATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG 60 EVDIYKHEPW DLAVFSRLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR 120 RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE NNGSLLDAYV LCRVFHKNNI 180 GPPSGNRYAP FMEEEWADGG GALIPGVDVR VRVEPQPQAN GHNQMEQEIH SASKNLININ 240 ELPRDGTPMD IEPNQQNHHE SDIKPQEHNN RNGYDEDEET LKREHAEVDE RRPPVCILNK 300 EAPLPLLQYK RRRQNESTNN SSRNSQDHCS STITTVDNTT TLISSSAAAT NTAISALLEF 360 SLMGISDKKE NQQQQLRPHK EAIPPTPQAS SEEKVNDLEK EIHQMSVERE TFKLEMMSAE 420 AMISILQSRI DALRQENEEL KKNNASGQAS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-50 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 6e-50 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 6e-50 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 6e-50 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 6e-50 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 6e-50 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 6e-50 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 6e-50 | 22 | 179 | 15 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g014110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY059795 | 0.0 | AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. | |||
GenBank | AY091262 | 0.0 | AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486659.1 | 0.0 | PREDICTED: NAC domain-containing protein 59-like | ||||
Swissprot | Q9SQX9 | 0.0 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | R0G4Z3 | 0.0 | R0G4Z3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010486659.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.2 | 0.0 | NAC domain containing protein 50 |
Publications ? help Back to Top | |||
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