PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g009880.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 184aa MW: 20644.8 Da PI: 4.1967 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.4 | 2.6e-18 | 15 | 89 | 8 | 86 |
-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 + +s+ l +p ++ e+ + +kt +l+ + g+ W+v + + +++++++++GW +Fv++n+Lk+g+f++F +dg Csa19g009880.1 15 LSQYSSDSLLIPVSYYEHLP--RPLPKTAILMGTGGKIWKVVM--KSRQEQVYFERGWANFVDDNDLKDGEFLIFVFDG 89 45667788********5555..55999****************..999999************************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 3.92E-23 | 7 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.73E-20 | 8 | 98 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.3E-21 | 8 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.93 | 8 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.9E-18 | 10 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-15 | 12 | 89 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MASGDVLPRF FSVYLSQYSS DSLLIPVSYY EHLPRPLPKT AILMGTGGKI WKVVMKSRQE 60 QVYFERGWAN FVDDNDLKDG EFLIFVFDGY RLYEVSIFGH GGCKEIRAAV EVEEISDGTE 120 DENNEISLES VIQDEEEETI DADAKSDTDY SPDSPDTTTI SVESAEVFNS PATTSRKRGY 180 KKH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1yel_A | 1e-22 | 9 | 103 | 10 | 104 | At1g16640 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g009880.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486112.1 | 1e-134 | PREDICTED: B3 domain-containing protein REM21-like | ||||
Swissprot | Q9M8K2 | 1e-74 | REM21_ARATH; B3 domain-containing protein REM21 | ||||
TrEMBL | D7L4S8 | 2e-74 | D7L4S8_ARALL; Transcriptional factor B3 family protein | ||||
STRING | XP_010486112.1 | 1e-133 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1561 | 23 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G06160.1 | 3e-69 | B3 family protein |