PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Csa19g009770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 203aa MW: 22888.7 Da PI: 9.8295 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37 | 6.2e-12 | 2 | 50 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h ++Er+RR+++N+ + Lr+l P + k+ + a+i ++e+Ik+Lq Csa19g009770.1 2 SHIAVERNRRRQMNEHLKSLRSLTPCF---YIKRGDQASIIGGVIEFIKELQ 50 89************************9...9********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.73E-12 | 1 | 54 | No hit | No description |
PROSITE profile | PS50888 | 14.684 | 1 | 49 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-15 | 1 | 69 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 4.5E-12 | 2 | 61 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.5E-9 | 2 | 50 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.0E-11 | 4 | 55 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence Send to blast |
MSHIAVERNR RRQMNEHLKS LRSLTPCFYI KRGDQASIIG GVIEFIKELQ QLVQVLESKK 60 RRKTMNRPSF PYDHQTIEPS NLAASTTRVP FSRIENVMTT STFKEVGACC NSPHANVEAK 120 ISGSNVVLRV VSRRIMGQLV KIISVLEKLS FQVLHLNISS MEETVLYFFV VKIGLECHLS 180 LEELTLEVQK SFVPEGIVVS TT* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 58 | 62 | KKRRK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor. Together with FMA and SPCH, regulates the stomata formation. Required for the differentiation of stomatal guard cells, by promoting successive asymmetric cell divisions and the formation of guard mother cells. Promotes the conversion of the leaf epidermis into stomata. {ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Csa19g009770.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By UV, flagellin, and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AF488580 | 0.0 | AF488580.1 Arabidopsis thaliana clone bHLH045 putative bHLH transcription factor mRNA, partial sequence. | |||
GenBank | DQ446639 | 0.0 | DQ446639.1 Arabidopsis thaliana clone pENTR221-At3g06120 basic helix-loop-helix family protein (At3g06120) mRNA, complete cds. | |||
GenBank | DQ653068 | 0.0 | DQ653068.1 Arabidopsis thaliana clone 0000012753_0000009233 unknown mRNA. | |||
GenBank | DQ863645 | 0.0 | DQ863645.1 Arabidopsis thaliana helix-loop-helix protein (MUTE) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486102.1 | 1e-146 | PREDICTED: transcription factor MUTE-like | ||||
Swissprot | Q9M8K6 | 1e-140 | MUTE_ARATH; Transcription factor MUTE | ||||
TrEMBL | A0A178VCY0 | 1e-137 | A0A178VCY0_ARATH; MUTE | ||||
STRING | XP_010486102.1 | 1e-146 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7073 | 26 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G06120.1 | 1e-142 | bHLH family protein |