PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g008420.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 333aa MW: 37915.5 Da PI: 6.6501 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 54.1 | 1.9e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i n+s r+ tf kR++g++KK +ELS+LC++ ++ ii+s+ Csa19g008420.1 10 FITNDSSRKATFKKRKKGLMKKVNELSTLCGISACAIIYSP 50 89**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 17.1 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-25 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.61E-23 | 2 | 85 | No hit | No description |
SuperFamily | SSF55455 | 1.96E-25 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-8 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.1E-18 | 10 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.9E-8 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0043078 | Cellular Component | polar nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MTRKKVKLAF ITNDSSRKAT FKKRKKGLMK KVNELSTLCG ISACAIIYSP YDSNPEVWPS 60 NSGVQRIVSE FRTLPEMDQQ KKMVDQETFL RQRIAKASDH LRRQRKDNRE LEMTEVMFQC 120 LIGNMGMFHM NIMDLNDLGF LIEQYLKDIN RMFEILQNSG MEIGESSNAA GAVGTTFERT 180 GSMEIMASTT PPTTTPNDQA GSSSSPLAAF LNPLQQQQQQ HQQFRYPSSP HVGLYEQPPS 240 LNLNLNQNYS QNQHQWFMEM THHQPEPLNY AADDEQRGFL FMDDNHHDHH QPQDQHDQQI 300 LGDSPTVSTT VVTSSSTIPV TNPSPTNNTW FR* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 2 | 24 | RKKVKLAFITNDSSRKATFKKRK |
2 | 21 | 25 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00553 | DAP | Transfer from AT5G48670 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g008420.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486066.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
Swissprot | Q9FJK3 | 1e-123 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | R0G6N6 | 1e-149 | R0G6N6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010486066.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 1e-113 | AGAMOUS-like 80 |
Publications ? help Back to Top | |||
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