PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g006310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 195aa MW: 21864.3 Da PI: 9.72 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.1 | 8.2e-17 | 14 | 63 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+++n+ r + fskR+ gi+KK +EL +Cd+eva+++fs+ gk y+++ Csa19g006310.1 14 KKVDNYGDRMIAFSKRKGGIFKKLNELVSMCDVEVAILVFSQAGKPYTFA 63 578999******************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 1.06E-20 | 6 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-19 | 6 | 65 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 22.862 | 6 | 66 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 2.10E-24 | 7 | 65 | No hit | No description |
PRINTS | PR00404 | 4.6E-16 | 8 | 28 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.3E-18 | 16 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-16 | 28 | 43 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-16 | 43 | 64 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MGRKTKGKQK IEMKKVDNYG DRMIAFSKRK GGIFKKLNEL VSMCDVEVAI LVFSQAGKPY 60 TFAFPSMTEV AARLNPSGQE LFAKGHTGPL VEAYKKQRIH DGLVKMEALE KELALDLDEL 120 KEVKKSSKEK KLDKKWWNIP EEGLSMKEMQ RRHQALFDLH DNLCEMFFPL MGKDGGSSSS 180 RSLGYDHSGG SASD* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g006310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010489666.1 | 1e-142 | PREDICTED: agamous-like MADS-box protein AGL62 | ||||
TrEMBL | D7L216 | 5e-86 | D7L216_ARALL; MADS-box family protein | ||||
STRING | XP_010489666.1 | 1e-141 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04100.1 | 2e-69 | AGAMOUS-like 57 |