PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa19g006280.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 400aa MW: 46061.9 Da PI: 9.5984

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa19g006280.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170.6	4.9e-53	54	184	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+ +yL+kkv++++++l ++i++vdiyk++PwdLp+k+ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk + ++ Csa19g006280.1 54 LPPGFRFHPTDEELILHYLRKKVSSSPVPL-SIIADVDIYKSDPWDLPAKAPFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDKLIAVS 147 79**************************.89***********988899**********************************998 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++e++g+kk Lvfy+g+ pkg+kt+W+mheyrl Csa19g006280.1 148 ngqgSHENIGIKKALVFYRGKPPKGVKTNWIMHEYRL 184 66666666*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.27E-62	51	229	IPR003441	NAC domain
PROSITE profile	PS51005	60.359	54	229	IPR003441	NAC domain
Pfam	PF02365	5.3E-28	55	184	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
FAQFLFFSLV LTQKKKQSFS FVFLTYRSRF FYSYKIFKLS LKETMISKDP RSSLPPGFRF 60 HPTDEELILH YLRKKVSSSP VPLSIIADVD IYKSDPWDLP AKAPFGEKEW YFFSPRDRKY 120 PNGARPNRAA ASGYWKATGT DKLIAVSNGQ GSHENIGIKK ALVFYRGKPP KGVKTNWIMH 180 EYRLAESLSP KRIINSSSSQ VNNLGDRNLK SKEYSMRLDD WVLCRIYKKS HSSVSSPDVA 240 SVTSNQEQEE IENEPFVDRG TFLQNEQQPL KRQKSSFSNL LDATDFTFLT NFLNETPEIR 300 TESDFSFMVS NFSNPDIYGN HYLDQKLPQL SSPTSDTSGI GSKRERLDFA EETMNTSKKM 360 MNYYNYNNSI DQLDHSMIPQ SSFLNQELLM SSHSHYHGR*

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

FAQFLFFSLV LTQKKKQSFS FVFLTYRSRF FYSYKIFKLS LKETMISKDP RSSLPPGFRF  60
HPTDEELILH YLRKKVSSSP VPLSIIADVD IYKSDPWDLP AKAPFGEKEW YFFSPRDRKY  120
PNGARPNRAA ASGYWKATGT DKLIAVSNGQ GSHENIGIKK ALVFYRGKPP KGVKTNWIMH  180
EYRLAESLSP KRIINSSSSQ VNNLGDRNLK SKEYSMRLDD WVLCRIYKKS HSSVSSPDVA  240
SVTSNQEQEE IENEPFVDRG TFLQNEQQPL KRQKSSFSNL LDATDFTFLT NFLNETPEIR  300
TESDFSFMVS NFSNPDIYGN HYLDQKLPQL SSPTSDTSGI GSKRERLDFA EETMNTSKKM  360
MNYYNYNNSI DQLDHSMIPQ SSFLNQELLM SSHSHYHGR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-69	39	233	7	172	NAC domain-containing protein 19
3swm_B	2e-69	39	233	7	172	NAC domain-containing protein 19
3swm_C	2e-69	39	233	7	172	NAC domain-containing protein 19
3swm_D	2e-69	39	233	7	172	NAC domain-containing protein 19
3swp_A	2e-69	39	233	7	172	NAC domain-containing protein 19
3swp_B	2e-69	39	233	7	172	NAC domain-containing protein 19
3swp_C	2e-69	39	233	7	172	NAC domain-containing protein 19
3swp_D	2e-69	39	233	7	172	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:24363315}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa19g006280.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269\|PubMed:24363315, ECO:0000269\|PubMed:24659488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK227417	0.0	AK227417.1 Arabidopsis thaliana mRNA for NAM-like protein, complete cds, clone: RAFL14-07-D22.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010485778.1	0.0	PREDICTED: NAC transcription factor 29-like
Swissprot	Q84TD6	0.0	NAC47_ARATH; NAC transcription factor 47
TrEMBL	D7L213	0.0	D7L213_ARALL; ANAC047
STRING	XP_010485778.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7723	25	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	0.0	NAC domain containing protein 47

Publications ? help Back to Top
Hofmann NR A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air. Plant Cell, 2013. 25(12): p. 4771 [PMID:24363314] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]