PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa19g006270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 341aa MW: 38056.9 Da PI: 6.7404 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 175 | 2.2e-54 | 20 | 146 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yLk+kv + ++++ +i ++d++k ePwdLpk +k +eke yfF++rd+ky+tg r+nrat sgyWkatgkdke+++ Csa19g006270.1 20 LPPGFRFHPTDEEIITHYLKEKVFNIRFTA-AAIGQADLNKNEPWDLPKIAKMGEKEFYFFCQRDRKYPTGMRTNRATVSGYWKATGKDKEIFRG 113 79*************************999.78***************8888899***************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 kg lvg+kktLvfykgrapkgekt+Wvmheyrl Csa19g006270.1 114 KGCLVGMKKTLVFYKGRAPKGEKTNWVMHEYRL 146 *******************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.79E-62 | 17 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.234 | 20 | 171 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.0E-28 | 21 | 146 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:1900057 | Biological Process | positive regulation of leaf senescence | ||||
GO:1903648 | Biological Process | positive regulation of chlorophyll catabolic process | ||||
GO:0000975 | Molecular Function | regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MVEEGSVVVN QGGDQEVVDL PPGFRFHPTD EEIITHYLKE KVFNIRFTAA AIGQADLNKN 60 EPWDLPKIAK MGEKEFYFFC QRDRKYPTGM RTNRATVSGY WKATGKDKEI FRGKGCLVGM 120 KKTLVFYKGR APKGEKTNWV MHEYRLDGKY SYHNLPKTAR DEWVVCRVFH KNAPTTTINT 180 PNQLSRIDSL DNIDHLLDFS SLPPLIDPGF LSQPGPSFSG ASHDLKPVLH HPSTALVNNT 240 YLPTQTLNFP YHSVQNFRSD SGYGAGSGTN NKGMIKLEHS LVSASQETGL SSDVNTTATP 300 EISSYPLMMN PATDGAMMDG SKSACDDLDD LIFWEDLYTK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_B | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_C | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swm_D | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_A | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_B | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_C | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
3swp_D | 1e-50 | 18 | 173 | 18 | 170 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that acts as positive regulator of leaf senescence. Activates NYC1, SGR1, SGR2 and PAO, which are genes involved in chlorophyll catabolic processes. Activates senescence-associated genes, such as RNS1, SAG12 and SAG13. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00332 | DAP | Transfer from AT3G04060 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa19g006270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY084852 | 0.0 | AY084852.1 Arabidopsis thaliana clone 119460 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485777.1 | 0.0 | PREDICTED: NAC domain-containing protein 92-like | ||||
Swissprot | Q9SQQ6 | 0.0 | NAC46_ARATH; NAC domain-containing protein 46 | ||||
TrEMBL | A0A178VF11 | 0.0 | A0A178VF11_ARATH; NAC046 | ||||
STRING | XP_010485775.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04060.1 | 0.0 | NAC domain containing protein 46 |
Publications ? help Back to Top | |||
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