PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa19g002570.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 465aa    MW: 50478.7 Da    PI: 7.7513
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa19g002570.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1023.4e-32200256259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK++kg e+prsYY+Ct+a+Cpvkkkvers+ d+++++i+Y+g+H+he
  Csa19g002570.1 200 DDGYNWRKYGQKPIKGCEYPRSYYKCTHANCPVKKKVERSS-DGQITQIIYKGQHDHE 256
                     8****************************************.***************8 PP
2WRKY105.13.7e-33345403159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+a+C+v+k+ver+++d k+v++tYeg+Hnh+
  Csa19g002570.1 345 LDDGYRWRKYGQKVVKGNPHPRSYYKCTTANCTVRKHVERASTDAKAVITTYEGKHNHD 403
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-29191258IPR003657WRKY domain
SuperFamilySSF1182901.7E-25197258IPR003657WRKY domain
SMARTSM007742.0E-35199257IPR003657WRKY domain
PfamPF031065.4E-25200255IPR003657WRKY domain
PROSITE profilePS5081124.306200258IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.5E-36330405IPR003657WRKY domain
SuperFamilySSF1182904.18E-29337405IPR003657WRKY domain
PROSITE profilePS5081137.734340405IPR003657WRKY domain
SMARTSM007743.8E-38345404IPR003657WRKY domain
PfamPF031061.6E-25346403IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 465 aa     Download sequence    Send to blast
MAVEDDVSSI RTTTLVAPTR PTITVPQRPP AIETAAYFFG GGDGLSLSPG PLSFVSSLFV  60
DSFPDVLTPD NQRTTSFSQL LVGAMSVSPG AGGGGRSTTG MFAGGGPMFT IPSGISPSSL  120
LTSPMFFPPQ SPVQTGFVQP QPQPQQPGTF SHHMPTSTST IHGRQSFEVS QADQRAPNHH  180
NNQANNNRSY NVVNVDKPAD DGYNWRKYGQ KPIKGCEYPR SYYKCTHANC PVKKKVERSS  240
DGQITQIIYK GQHDHERPQN RRGGGGRDSV EVGDIHFVGG VGHMIESSDD SGYGKDHDDD  300
NNDDDDEDDD LPGSKIRKID GVSTTHRTVT EPKIIVQTRS EVDLLDDGYR WRKYGQKVVK  360
GNPHPRSYYK CTTANCTVRK HVERASTDAK AVITTYEGKH NHDVPAARNG TAAATAAAAG  420
TSEQHRMRSV SGNNMQQHMS FGNNNNNSGQ PPVLLRLKEE KITI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-38200406878Probable WRKY transcription factor 4
2lex_A3e-38200406878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa19g002570.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019096865.10.0PREDICTED: probable WRKY transcription factor 58
SwissprotQ93WU70.0WRK58_ARATH; Probable WRKY transcription factor 58
TrEMBLR0HLE10.0R0HLE1_9BRAS; Uncharacterized protein
STRINGXP_010432103.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156701416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-178WRKY DNA-binding protein 58
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]