PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g042250.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 298aa MW: 34626.8 Da PI: 8.0676

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g042250.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.3	7.4e-54	12	138	2	127
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 ppGfrFhPtdeelv +yLkkkv++++++l +vi+e+d+yk+ePwdL++ ++e+kewyfFs++dkky+tg+r+nrat +g+Wkatg+dk+v+ Csa18g042250.1 12 PPGFRFHPTDEELVGYYLKKKVASQRIDL-DVIREIDLYKIEPWDLQErcrIGYEEQKEWYFFSHKDKKYPTGTRTNRATVAGFWKATGRDKSVY 105 9**************************.9***********953432234677*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 +++l+g++ktLvfy+grap+g+k+dW++hey Csa18g042250.1 106 L-NSKLIGMRKTLVFYRGRAPNGQKSDWIIHEYY 138 .999**************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.98E-59	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	57.406	11	161	IPR003441	NAC domain
Pfam	PF02365	1.4E-26	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
MMRVDQESSS IPPGFRFHPT DEELVGYYLK KKVASQRIDL DVIREIDLYK IEPWDLQERC 60 RIGYEEQKEW YFFSHKDKKY PTGTRTNRAT VAGFWKATGR DKSVYLNSKL IGMRKTLVFY 120 RGRAPNGQKS DWIIHEYYSL ESHQNSPPQE EGWVVCRAFK KRTTTTVPNK RRQVWDPNCF 180 FYDASTLLQP LGKRSRHNST EFAGTPFKQE VVSEGNHHVE DGDLGTMYLQ SMGDDDQFSQ 240 LPQLESPSLD PWEMTPKSSI SENSRRGKND VSVEKRITDW RSLDKFVASQ LLMSGED*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-50	10	165	16	169	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-50	10	165	16	169	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-50	10	165	16	169	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-50	10	165	16	169	NO APICAL MERISTEM PROTEIN
3swm_A	9e-50	10	165	19	172	NAC domain-containing protein 19
3swm_B	9e-50	10	165	19	172	NAC domain-containing protein 19
3swm_C	9e-50	10	165	19	172	NAC domain-containing protein 19
3swm_D	9e-50	10	165	19	172	NAC domain-containing protein 19
3swp_A	9e-50	10	165	19	172	NAC domain-containing protein 19
3swp_B	9e-50	10	165	19	172	NAC domain-containing protein 19
3swp_C	9e-50	10	165	19	172	NAC domain-containing protein 19
3swp_D	9e-50	10	165	19	172	NAC domain-containing protein 19
3ulx_A	8e-50	2	163	3	170	Stress-induced transcription factor NAC1
4dul_A	8e-50	10	165	16	169	NAC domain-containing protein 19
4dul_B	8e-50	10	165	16	169	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:25148240}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g042250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484664.1	0.0	PREDICTED: NAC domain-containing protein 105-like
Swissprot	Q9FH59	0.0	NC105_ARATH; NAC domain-containing protein 105
TrEMBL	R0GRH2	0.0	R0GRH2_9BRAS; Uncharacterized protein
STRING	XP_010484664.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15134	16	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66300.1	0.0	NAC domain containing protein 105

Publications ? help Back to Top
Tan TT, et al. Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation. Plant Physiol., 2018. 176(1): p. 773-789 [PMID:29133368]