PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g040550.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 320aa    MW: 37074.1 Da    PI: 6.8604
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g040550.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B359.55.7e-1910104198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                     ffkv+     ++s+ lv+p  f++   gk + +k+  l de gr W+v+   + + +r  ++++kGW++F+k++ L+ gDf+vF++dg+s+f   
  Csa18g040550.1  10 FFKVF--LPEFSSHELVIPPAFIDLLVGK-PLPKKAFLLDEIGRLWRVETETEDTEERfcVLFKKGWESFAKDQSLEFGDFLVFSYDGDSRF--S 99 
                     88999..889999**********766544.5999****************887777778999**************************9999..8 PP

                     EEEE- CS
              B3  94 vkvfr 98 
                     v++f 
  Csa18g040550.1 100 VRIFA 104
                     88875 PP
2B335.51.8e-11213300996
                     HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-..SS.SEE..EEEE CS
              B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkld..gr.sefelvvkv 96 
                      +++ + l +p +f++ +g++   + +l l+de+g++W +k+  +++ ++  + ++  W+ F+k+++L+ +  ++++++  ++ ++ e  v++
  Csa18g040550.1 213 TSSSYQKLEIPTTFLKLNGIE--LEEELELRDEDGKKWPLKV--ENHCRGqrFSFA-TWSCFCKSQKLRKNHKFLLEFIvpRTgRCNEIQVHI 300
                     455566789******888766..5569***************..555554336666.8*************9999996644445555566665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086313.7758106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-199106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.55E-189105IPR015300DNA-binding pseudobarrel domain
PfamPF023622.8E-1710104IPR003340B3 DNA binding domain
SMARTSM010191.3E-2010106IPR003340B3 DNA binding domain
CDDcd100179.77E-1710103No hitNo description
SuperFamilySSF1019363.92E-14201301IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.8E-15201301IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.461205304IPR003340B3 DNA binding domain
CDDcd100178.40E-7206302No hitNo description
SMARTSM010195.6E-11208304IPR003340B3 DNA binding domain
PfamPF023623.0E-9212302IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MVETGKDLEF FKVFLPEFSS HELVIPPAFI DLLVGKPLPK KAFLLDEIGR LWRVETETED  60
TEERFCVLFK KGWESFAKDQ SLEFGDFLVF SYDGDSRFSV RIFAQDGIRR DVGVVTTTVG  120
SRVSVDNEPV DDICTKPESR KDCGNKRKRE HDSVNDKPDQ YESTSKIKSE HRDKTQRTIN  180
RAGDPCDISW FREDGVEELV YKPKNPHFLR NITSSSYQKL EIPTTFLKLN GIELEEELEL  240
RDEDGKKWPL KVENHCRGQR FSFATWSCFC KSQKLRKNHK FLLEFIVPRT GRCNEIQVHI  300
ISGRLPTTMT TTKYQVLAM*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g040550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485329.10.0PREDICTED: putative B3 domain-containing protein At5g66980
SwissprotQ9FGD21e-152Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBLD7MLD41e-159D7MLD4_ARALL; Transcriptional factor B3 family protein
STRINGXP_010485329.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM128022130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-130B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]