PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g038180.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 189aa MW: 21691 Da PI: 4.5356

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g038180.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	108.3	9.1e-34	3	118	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++PwdLp k+ +e ++wyf+s++ + r t++gyW + g d++++++ Csa18g038180.1 3 LPPGFRFFPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPYDPWDLPGKALGEGRQWYFYSRKT--------QDRLTSNGYWGSMGMDEPIYTS 88 79***********************999.99***********87778899*9975........47999***********98 PP NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk L+fy g++ +t+W+m+ey+l Csa18g038180.1 89 sTHKKVGIKKYLTFYLGDS----QTNWIMQEYSL 118 77888******7654....68*****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.22E-43	1	156	IPR003441	NAC domain
PROSITE profile	PS51005	41.634	3	156	IPR003441	NAC domain
Pfam	PF02365	1.2E-21	4	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MNLPPGFRFF PTDEELVVHF LHRKASLLPC HPDVIPDLDL YPYDPWDLPG KALGEGRQWY 60 FYSRKTQDRL TSNGYWGSMG MDEPIYTSST HKKVGIKKYL TFYLGDSQTN WIMQEYSLPD 120 SSSSSSRSSK RSSRASSSSS HKPDYSKWVI CRVYEQNCSE EEEDDETELS CLDEVFLSLD 180 DLDEVSLP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-35	1	162	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-35	1	162	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-35	1	162	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-35	1	162	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-35	1	162	18	174	NAC domain-containing protein 19
3swm_B	4e-35	1	162	18	174	NAC domain-containing protein 19
3swm_C	4e-35	1	162	18	174	NAC domain-containing protein 19
3swm_D	4e-35	1	162	18	174	NAC domain-containing protein 19
3swp_A	4e-35	1	162	18	174	NAC domain-containing protein 19
3swp_B	4e-35	1	162	18	174	NAC domain-containing protein 19
3swp_C	4e-35	1	162	18	174	NAC domain-containing protein 19
3swp_D	4e-35	1	162	18	174	NAC domain-containing protein 19
4dul_A	4e-35	1	162	15	171	NAC domain-containing protein 19
4dul_B	4e-35	1	162	15	171	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g038180.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK118783	0.0	AK118783.1 Arabidopsis thaliana At5g64530 mRNA for unknown protein, complete cds, clone: RAFL21-11-N14.
GenBank	BT025746	0.0	BT025746.1 Arabidopsis thaliana At5g64530 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010484238.1	1e-137	PREDICTED: NAC domain-containing protein 104-like
Swissprot	Q8GWK6	1e-118	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	D7MRV0	1e-117	D7MRV0_ARALL; ANAC104/XND1
STRING	XP_010484238.1	1e-137	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3674	28	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	9e-87	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]