PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g035410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 321aa    MW: 36095 Da    PI: 7.1306
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g035410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind118.34.5e-37241152102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y+++ed++++++isw+e+g+sf+v+++++fak++Lpk+Fkh+nf+SFvRQLn+YgFkkv  ++         weF++++Fk+g+k+ll++
  Csa18g035410.1  24 FLTKTYNLVEDSSINDVISWNEDGSSFIVWNPTDFAKDLLPKHFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNDYFKRGEKRLLRE 109
                     9*****************************************************************99.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  Csa18g035410.1 110 IQRRKI 115
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.8E-5620113IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.8E-3821113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.63E-3421113IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.2E-3224113IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-192447IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-196274IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406387IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.6E-197587IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MNSPPVDAMT TGESLSQRSI PTPFLTKTYN LVEDSSINDV ISWNEDGSSF IVWNPTDFAK  60
DLLPKHFKHN NFSSFVRQLN TYGFKKVVPD RWEFSNDYFK RGEKRLLREI QRRKITTSHQ  120
AAAAVTTPPS SSEQRLQTTL VVSPSNSGED RNNNNTQVMS SSPPSSWYVQ TTTGNNGAGL  180
SVELLEENEK LRNQNIQLNR ELTQMKSVCD NIFTLMSSYV GSHPDRSYSP GGGGSSSHQP  240
VEFLPAKKRF CDVDGEEEEE EASPRLFGVP IGLKRTRSEG LHQVKTVSTT TAPVGEKKSE  300
EEPPWLRYYN YNRTNQRVCN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B6e-24241185109Heat shock factor protein 2
5d8l_B6e-24241185109Heat shock factor protein 2
5d8l_D6e-24241185109Heat shock factor protein 2
5d8l_F6e-24241185109Heat shock factor protein 2
5d8l_H6e-24241185109Heat shock factor protein 2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00575DAPTransfer from AT5G62020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g035410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4938081e-128AB493808.1 Arabidopsis thaliana At5g62020 mRNA for hypothetical protein, partial cds, clone: RAAt5g62020.
GenBankAJ2518671e-128AJ251867.1 Arabidopsis thaliana mRNA for heat shock factor 6 (hsf6 gene).
GenBankAK2296901e-128AK229690.1 Arabidopsis thaliana mRNA for heat shock factor 6, complete cds, clone: RAFL21-11-D17.
GenBankBT0085421e-128BT008542.1 Arabidopsis thaliana clone U51273 putative heat shock factor 6 (At5g62020) mRNA, complete cds.
GenBankBT0086581e-128BT008658.1 Arabidopsis thaliana clone RAFL21-11-D17 (R51273) putative heat shock factor 6 (At5g62020) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010483895.10.0PREDICTED: heat stress transcription factor B-2a-like
SwissprotQ9SCW41e-164HFB2A_ARATH; Heat stress transcription factor B-2a
TrEMBLR0GR581e-174R0GR58_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010483895.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96528111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-158heat shock transcription factor B2A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]