PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g034810.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C2H2

Protein Properties

Length: 291aa MW: 32544.4 Da PI: 7.7864

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g034810.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.9	7.9e-05	11	32	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+ksFs+ L H+++H Csa18g034810.1 11 TCQVCKKSFSNGKALGGHMKSH 32 6*******************99 PP
2	zf-C2H2	11.6	0.00084	254	276	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+++F + L H + H Csa18g034810.1 254 YECQICNRVFESGQALGGHKKIH 276 99**********99999999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.325	10	37	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.14	10	32	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	12	32	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.6E-9	12	34	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.16	213	235	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	213	240	IPR007087	Zinc finger, C2H2
Pfam	PF13912	3.2E-9	213	236	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.2E-7	213	276	No hit	No description
PROSITE pattern	PS00028	0	215	235	IPR007087	Zinc finger, C2H2
Pfam	PF13912	1.4E-11	253	276	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.032	254	276	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.367	254	276	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	256	276	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MMNSLLNQKK TCQVCKKSFS NGKALGGHMK SHRKLSPESS TSSITSSLRP RINLGANIRT 60 HETVLMRSVV HTNEVVGGQT PDLNKEGEQQ VTTLKKKLVL DLDKENSTES PALCLLQMKD 120 MWSKSCQNPK STDSLISTRK GKDIEIDSEE DIEDSDDEYV VEDEDNKDGD ALKFLTSDVG 180 YLTADSDEND DNYGDENAHY GTKERKGKKQ SKYRCDICGK ILRSYQALGG HRTSHSNKKL 240 KISDQDAPAV RRHYECQICN RVFESGQALG GHKKIHYMFL QPFNFSTSAK *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g034810.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010483817.1	0.0	PREDICTED: zinc finger protein ZAT1-like
TrEMBL	R0G7H6	1e-125	R0G7H6_9BRAS; Uncharacterized protein
STRING	XP_010483817.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM14171	15	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61470.1	4e-79	C2H2-like zinc finger protein