PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g032550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 35422.4 Da PI: 5.0082 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 59.1 | 1.5e-18 | 12 | 162 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra.....tksgyWka 85 G++F+Pt+ e+++ yL + ++g+++e +i d+y ePw L++ +++ +e+ewy+ +++ + ++ gk ++r+ +++g W+a Csa18g032550.1 12 EGLHFDPTEPEVINSYLIPMLRGEPMED--FIVVKDVYAKEPWLLDH-INHpflNEDEWYYVTPKTQISKekvaCGKYSKRKiigdgIDRGNWNA 103 599**********************766..788889*********83.333345788*****998765552233566777755666666999*** PP NAM 86 tgkdkevlskkgelvglkktLvfy.........kgrapkge.............ktdWvmheyrl 128 g++ + + +g+++g+k+ ++++ + + + +W+m+e+rl Csa18g032550.1 104 NGTKDIIDEDTGKVIGVKQNFTYHsasknknkkQ------KrgdvgsvsvdvprNESWIMDEFRL 162 ***88888889*************6654432220......1223444555555577888888886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 26.15 | 10 | 182 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 1.06E-24 | 12 | 182 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-11 | 13 | 162 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MTTENDYYEE DEGLHFDPTE PEVINSYLIP MLRGEPMEDF IVVKDVYAKE PWLLDHINHP 60 FLNEDEWYYV TPKTQISKEK VACGKYSKRK IIGDGIDRGN WNANGTKDII DEDTGKVIGV 120 KQNFTYHSAS KNKNKKQKRG DVGSVSVDVP RNESWIMDEF RLPTSKDNDT FQERVICKIH 180 KKKWSEKKEK KKEEKKKEKE NDHHEEDILD QELVVPCKIH KKRNSKKKKE KDSYEEASTS 240 TNHYQHDESS SSSFWEQQKK EALGGEKVDE QVEAMETERF EDWIEELLGS ENICDQDLLS 300 LP* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 221 | 229 | KRNSKKKKE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g032550.1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010485233.1 | 0.0 | PREDICTED: NAC domain-containing protein 35-like | ||||
TrEMBL | R0GU20 | 4e-80 | R0GU20_9BRAS; Uncharacterized protein | ||||
STRING | XP_010485233.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2607 | 13 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18300.1 | 7e-13 | NAC domain containing protein 88 |