PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g032320.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 289aa    MW: 33621.3 Da    PI: 5.1323
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g032320.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.72.1e-1891593128
             NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkya....tgkrknra.....tksgyWka 85 
                      G++F+Pt  e+++ yL + ++g+++e   +i   d+y  ePw L+++ ++   +e+ewy+ s++ + ++     gk ++r+     +++g W+a
  Csa18g032320.1   9 EGLHFDPTGPEVINSYLIPMLRGEPMED--FIVVKDVYAKEPWLLDHT-NHpflKEDEWYYVSRNTQISKekvgCGKYSKRKiigdgIDRGNWNA 100
                     599**********************766..788889*********842.22344788***99998765553333566777755666666999*** PP

             NAM  86 tgkdkevlskkgelvglkktLvfy.........kgrapkge..........ktdWvmheyrl 128
                      gk+  + +++g+++g+k+ ++++         +   ++g           + +W+m+e+rl
  Csa18g032320.1 101 NGKEDIIDEETGKVIGIKQNFTYHsaiknknkkQ---KRGDggsvsidvpsNESWIMDEFRL 159
                     ***9999999**************7776553321...2222444555555588999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.3047175IPR003441NAC domain
SuperFamilySSF1019411.31E-239175IPR003441NAC domain
PfamPF023654.6E-1110159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MNDYYEEDEG LHFDPTGPEV INSYLIPMLR GEPMEDFIVV KDVYAKEPWL LDHTNHPFLK  60
EDEWYYVSRN TQISKEKVGC GKYSKRKIIG DGIDRGNWNA NGKEDIIDEE TGKVIGIKQN  120
FTYHSAIKNK NKKQKRGDGG SVSIDVPSNE SWIMDEFRLP TDTFQDTVLC KIHKKKWSEK  180
KKEKEKENDH HVEDKLDQEL VVPRKIHKKR NSKKKKEKDH HEEASTSTNH DQHDDESSSS  240
SSFWEQQKKE ALGGEKVDEQ VEAMENERFE DWIEELLLGS DQDLLSIP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208216KRNSKKKKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g032320.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485226.10.0PREDICTED: NAC domain-containing protein 35-like
TrEMBLR0GU205e-76R0GU20_9BRAS; Uncharacterized protein
STRINGXP_010485226.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.14e-12NAC domain containing protein 88