PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g029680.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

HRT-like

Protein Properties

Length: 451aa MW: 50559.7 Da PI: 9.0497

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g029680.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	57.8	1.8e-18	247	277	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvile+G +C+r+PvkgRKRC eHKG+R+ Csa18g029680.1 247 VCGVILENGGFCNRSPVKGRKRCIEHKGQRV 277 7*****************************7 PP
2	HRT-like	54.1	2.5e-17	308	338	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil d +C+++Pv+gRKRCe HKGmRi Csa18g029680.1 308 TCGVILPDMEPCNKSPVPGRKRCEDHKGMRI 338 7*****************************7 PP
3	HRT-like	25.8	1.8e-08	377	403	2	28
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKG 28 C +++++G +C+r+ g KRC++HK Csa18g029680.1 377 CEATTKNGLPCTRSSPIGSKRCWQHKE 403 99************************7 PP
4	HRT-like	56.1	6.2e-18	420	449	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l +G +C+r+PvkgRKRCeeHKGmRi Csa18g029680.1 420 CGVKLCNGLICERSPVKGRKRCEEHKGMRI 449 *****************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence Send to blast
MVLIGSNDWE DFNNGKDGVG RYRVQNLPRK SFPGLYELGV AVIGQDQGRK LEPDDVLAAY 60 LGQAESVRTR LQRYGRSGAH LRNVYNLVDC ETVESSPVKK AVTGGLFEDI FSKGGSILYR 120 WAPMGSKRVA EATEGMLLST FDYAWNKGSN GERRQLDLLK KLGDLEFMRK RKSGISRMFF 180 PFLRNQVGIR IKGEKHVLKE ERKLSCDVVD EEKSSNFLTS ILKLTRSRPQ PVSDRFDEID 240 GSCTDSVCGV ILENGGFCNR SPVKGRKRCI EHKGQRVCRV SPVKQSPPPN PEIFTGQDHH 300 NHNDSDVTCG VILPDMEPCN KSPVPGRKRC EDHKGMRINA FLFLLNETDR EKTVKDEKSD 360 PESHKEISNE EGSPRFCEAT TKNGLPCTRS SPIGSKRCWQ HKEKISPVCF QPEAAKIVAC 420 GVKLCNGLIC ERSPVKGRKR CEEHKGMRIT *

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence Send to blast

MVLIGSNDWE DFNNGKDGVG RYRVQNLPRK SFPGLYELGV AVIGQDQGRK LEPDDVLAAY  60
LGQAESVRTR LQRYGRSGAH LRNVYNLVDC ETVESSPVKK AVTGGLFEDI FSKGGSILYR  120
WAPMGSKRVA EATEGMLLST FDYAWNKGSN GERRQLDLLK KLGDLEFMRK RKSGISRMFF  180
PFLRNQVGIR IKGEKHVLKE ERKLSCDVVD EEKSSNFLTS ILKLTRSRPQ PVSDRFDEID  240
GSCTDSVCGV ILENGGFCNR SPVKGRKRCI EHKGQRVCRV SPVKQSPPPN PEIFTGQDHH  300
NHNDSDVTCG VILPDMEPCN KSPVPGRKRC EDHKGMRINA FLFLLNETDR EKTVKDEKSD  360
PESHKEISNE EGSPRFCEAT TKNGLPCTRS SPIGSKRCWQ HKEKISPVCF QPEAAKIVAC  420
GVKLCNGLIC ERSPVKGRKR CEEHKGMRIT *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	167	172	MRKRKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in the regulation of cell differentiation in meristems. Probably regulates the expression of various KNAT genes involved in the maintenance of the cells in an undifferentiated, merismastic state. Plays a role in the regulation of gibberellin 20 oxidase and the gibberellin-regulated protein GASA4. Localizes in the nucleus during the cellular differentiation state and may act via a single strand cutting domain (PubMed:17991462). Transcriptional regulator required for the induction of dormancy during late seed development. Interacts genetically with FUS3 and may be component of the same regulatory pathway during embryogenesis. Binds both linear and supercoiled DNA without sequence preference (PubMed:22226340). {ECO:0000269\|PubMed:17991462, ECO:0000269\|PubMed:22226340}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g029680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB013392	0.0	AB013392.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MIK19.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010483159.1	0.0	PREDICTED: protein EFFECTOR OF TRANSCRIPTION 2
Swissprot	F4K933	0.0	ET2_ARATH; Protein EFFECTOR OF TRANSCRIPTION 2
TrEMBL	A0A178UQQ2	0.0	A0A178UQQ2_ARATH; ET2
STRING	XP_010483159.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	0.0	effector of transcription2