PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g023770.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 430aa MW: 47415.9 Da PI: 5.1922

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g023770.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.4	4.6e-31	240	298	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers+ dp+++++tY+geH+h+ Csa18g023770.1 240 SDMWAWRKYGQKPIKGSPYPRNYYRCSSSkGCLARKQVERSNLDPNIFIVTYTGEHTHP 298 79***********************998**************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.6E-31	226	300	IPR003657	WRKY domain
SuperFamily	SSF118290	6.02E-27	232	300	IPR003657	WRKY domain
PROSITE profile	PS50811	33.281	234	300	IPR003657	WRKY domain
SMART	SM00774	6.1E-39	239	299	IPR003657	WRKY domain
Pfam	PF03106	4.1E-26	241	298	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007263	Biological Process	nitric oxide mediated signal transduction
GO:0009739	Biological Process	response to gibberellin
GO:0042742	Biological Process	defense response to bacterium
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
SIPLGHCPNP SILPLSLSHS FDKEKVSAVL YAIVCLLLSL LTIRSKKVNK LFLKKTQEFK 60 ITAMSSEDWD LFAVVRSCSS SVSTATINTN SCVGHEDDGG NCKQQQDPPP PPLFTHIHGD 120 RDSSSSCNEL QESCKPFLPV TTTTTTWSPP PLLPPPPPIV SSPAPNVSMK QEQLLLESQD 180 QKPPLGVRVF PPPTSSSVFV FRGQRDQLLQ QQSQPPLRSR KRKNQQKRTI CHVTQENLSS 240 DMWAWRKYGQ KPIKGSPYPR NYYRCSSSKG CLARKQVERS NLDPNIFIVT YTGEHTHPRP 300 THRNSLAGST RNKSQPVNPI PKPDSSGQTV LGSNAVKEEI HLSPTTPLKG NDDVQGTNGD 360 EDMISQEVNM EDEEEDVEEV EEEDDEDVGE DDDMDDLLIP NLAVRDRDDL FFAGNFSSWS 420 AGSAGDGGG*

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

SIPLGHCPNP SILPLSLSHS FDKEKVSAVL YAIVCLLLSL LTIRSKKVNK LFLKKTQEFK  60
ITAMSSEDWD LFAVVRSCSS SVSTATINTN SCVGHEDDGG NCKQQQDPPP PPLFTHIHGD  120
RDSSSSCNEL QESCKPFLPV TTTTTTWSPP PLLPPPPPIV SSPAPNVSMK QEQLLLESQD  180
QKPPLGVRVF PPPTSSSVFV FRGQRDQLLQ QQSQPPLRSR KRKNQQKRTI CHVTQENLSS  240
DMWAWRKYGQ KPIKGSPYPR NYYRCSSSKG CLARKQVERS NLDPNIFIVT YTGEHTHPRP  300
THRNSLAGST RNKSQPVNPI PKPDSSGQTV LGSNAVKEEI HLSPTTPLKG NDDVQGTNGD  360
EDMISQEVNM EDEEEDVEEV EEEDDEDVGE DDDMDDLLIP NLAVRDRDDL FFAGNFSSWS  420
AGSAGDGGG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-19	241	301	18	80	Disease resistance protein RRS1
5w3x_D	1e-19	241	301	18	80	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00561	DAP	Transfer from AT5G52830	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g023770.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF418310	0.0	AF418310.1 Arabidopsis thaliana WRKY transcription factor 27 (WRKY27) mRNA, complete cds.
GenBank	AK230436	0.0	AK230436.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-40-N05.
GenBank	BT026451	0.0	BT026451.1 Arabidopsis thaliana At5g52830 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010482660.1	0.0	PREDICTED: probable WRKY transcription factor 27
Swissprot	Q9FLX8	1e-154	WRK27_ARATH; Probable WRKY transcription factor 27
TrEMBL	A0A1J3E274	0.0	A0A1J3E274_NOCCA; Putative WRKY transcription factor 27
STRING	XP_010482660.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9998	26	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52830.1	1e-138	WRKY DNA-binding protein 27

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Mukhtar MS,Liu X,Somssich IE Elucidating the role of WRKY27 in male sterility in Arabidopsis. Plant Signal Behav, 2017. 12(9): p. e1363945 [PMID:28816593]