PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g023250.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family Nin-like
Protein Properties Length: 526aa    MW: 59122.4 Da    PI: 4.6556
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g023250.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK76.14e-24429479252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     +k+++l+d+++ F+lpi+ AAk++++c+TvLK+iCR+  ++RWPhRkiksl
  Csa18g023250.1 429 TKRLTLKDINMLFHLPIETAAKQMNLCPTVLKKICRKGSLMRWPHRKIKSL 479
                     799**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5005315.95179IPR000626Ubiquitin domain
SuperFamilySSF542364.84E-16181IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.908.1E-16176No hitNo description
SMARTSM002138.3E-11175IPR000626Ubiquitin domain
PfamPF002403.2E-13375IPR000626Ubiquitin domain
PROSITE profilePS5151916.279419499IPR003035RWP-RK domain
PfamPF020421.2E-20432479IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MKIVVETLEG TRFEIEVELK DSVAKVKKNI EDVVGDSTYP AAQQILTHKG KVLRDETTME  60
ANKVIEKSVI AIMMTKYQSL QPLVQSSALE VDEGKDPYND LFGGFEQCTE EDFSNVMADP  120
NPNLMDMSFL ENSPPPLDFS TLSIDVDETK LLYKFDLSIA DYDINNDELS FVDDGFTISW  180
DMFEPSNDDD LNENINNDVL GEIGNDNGNN NVGEITTFGV STRVFGDPNG PDFESGGTST  240
MDVLVPTSSD EMLVCSCCKM LRELVHIKDG EMSTLEIFGG IGFFCHAILL TQWFASDSTE  300
RQSQTFHLKD LTMEEVKRFI EDYCSERVAS GLSLVQDTNA TFYQAISANF IFNQLPPMLT  360
IPSPTDVPMF LVSPDEALDV PLVPLHVGPR EETTTGVPKE RKKRKTPLAT QVLSLISQFT  420
TRQEQRERTK RLTLKDINML FHLPIETAAK QMNLCPTVLK KICRKGSLMR WPHRKIKSLH  480
TKITSLKSLV HTAKNDKVKA RTEAEIERLQ RRIDKICSDA LKNMK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g023250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL3911487e-42AL391148.1 Arabidopsis thaliana DNA chromosome 5, BAC clone T21H19 (ESSA project).
GenBankCP0026887e-42CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010485077.10.0PREDICTED: uncharacterized protein LOC104763398
TrEMBLA0A178UGY40.0A0A178UGY4_ARATH; Uncharacterized protein
STRINGXP_010485077.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40762342
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53040.17e-12RWP-RK domain-containing protein