PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g021620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 299aa    MW: 33250.1 Da    PI: 6.5232
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g021620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.5e-09157204455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++ +L++l+P +    +k   Ka +L + ++Y++ Lq
  Csa18g021620.1 157 SHSLAERVRREKISERMRTLQKLVPGC----DKVTGKALMLDEIINYVQTLQ 204
                     8*************************9....555****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.54E-17151218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-10151208No hitNo description
Gene3DG3DSA:4.10.280.102.0E-16153214IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.574153203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-6157204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10159209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MATFSYFQNY PHSLLDPLLF PTPNSSVDIT GIIDQNILHS LPDVSKIEDT SVYPFLDEYN  60
NVDKTESDSF KKQANTTKTA TTGSSSCEQL NNGPSTTTIN GKVRRRNIKN DSNSKEGVEG  120
RKRKIQRSDV KEKRGSKEEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMRTLQKLV  180
PGCDKVTGKA LMLDEIINYV QTLQNQVEFL SMKLASTSPV VYDFGSDLDG LILTSEMGSP  240
DVGTSFTNAM PTTTPIFPSL LDNSIVHTHA QLQEGGGEER EKFVDRSGFN DNSFCSFP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103123RRRNIKNDSNSKEGVEGRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g021620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482405.10.0PREDICTED: transcription factor bHLH137-like isoform X1
SwissprotQ93W881e-166BH137_ARATH; Transcription factor bHLH137
TrEMBLR0GN380.0R0GN38_9BRAS; Uncharacterized protein
STRINGXP_010482405.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM87962439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.21e-160bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]