PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g018620.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ARR-B
Protein Properties Length: 483aa    MW: 54480.1 Da    PI: 6.3308
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g018620.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like76.73.1e-24226279155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k r++W  eLH++F++av+ L G++kA+Pk+ile+m+v+ +++e+v+SHLQk+R+
  Csa18g018620.1 226 KRRVVWDGELHKKFLDAVNCL-GHNKAVPKKILEIMNVENISRENVASHLQKFRM 279
                     689******************.********************************7 PP
2Response_reg441.2e-15421531108
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEE....SSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHH CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillD....iempgmdGlellkeireeepklpiivvtahgeeedalea 89 
                     vl+ d++p+ + +l++ l++ +y +v+++ + +ea+ ll++++  +++ ++     i+ ++ d ++ ++ei +e  +l ii+++  ++ + +++ 
  Csa18g018620.1  42 VLVFDEDPAYLLILERHLQEFQY-QVTTCNEESEAISLLRNHKnrFHIAMIQanssINSSNGDRIRYISEIGSEM-DLAIIMISKDDSIQSVVKW 134
                     7999*******************.***************999889999999988889999999999999996654.8****************** PP

                     HHTTESEEEESS--HHHHH CS
    Response_reg  90 lkaGakdflsKpfdpeelv 108
                     ++ Ga d+l Kp+ pe+l+
  Csa18g018620.1 135 MSTGAIDYLIKPIRPEDLR 153
                     *****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521725.27E-1938170IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.3E-1938164No hitNo description
SMARTSM004483.7E-440156IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011025.2341160IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-1042153IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.68E-943164No hitNo description
Gene3DG3DSA:1.10.10.603.6E-23224283IPR009057Homeodomain-like
SuperFamilySSF466892.69E-17224283IPR009057Homeodomain-like
TIGRFAMsTIGR015573.6E-23226279IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MVVTLDPGGV PSSDDGGGRP NRDHPNNISD MFPSNFPEGL RVLVFDEDPA YLLILERHLQ  60
EFQYQVTTCN EESEAISLLR NHKNRFHIAM IQANSSINSS NGDRIRYISE IGSEMDLAII  120
MISKDDSIQS VVKWMSTGAI DYLIKPIRPE DLRIIFKHVV KKMLGRRPLV TVEAEEKAAG  180
EKSSSVGDST IRNPNKRTSS SSPNAEVNEE DHNDDDRVCA SSSKKKRRVV WDGELHKKFL  240
DAVNCLGHNK AVPKKILEIM NVENISRENV ASHLQKFRMG MKKGNEKIKN EETTNLALIT  300
PQEGIMYVGA DASQYFREKN FQLPTHHVNN IPQPTYVPQH TTNPNNLMTH LISPLEHHYD  360
EAFVAVSGRG LVMNHQYHNH HQTSDFTVEE TFGYKNFQEE EEPTVASLML TPNPKHVELY  420
PCQPEYNSME IRNNHEVGTS SSMLHLPQLI SSPRTYSLEQ HESGGFSYNS DITGSINYSK  480
SA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-19222283162ARR10-B
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1223227KKKRR
2223228KKKRRV
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g018620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023633365.10.0putative two-component response regulator-like APRR4
SwissprotQ9FJ161e-120APRR4_ARATH; Putative two-component response regulator-like APRR4
TrEMBLA0A087G9M41e-139A0A087G9M4_ARAAL; Uncharacterized protein
STRINGXP_010471835.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM132221624
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49240.11e-111pseudo-response regulator 4