PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g014690.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 500aa    MW: 55004.1 Da    PI: 6.5201
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g014690.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH261.6e-08315362455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Csa18g014690.1 315 SHSLAERVRREKIGERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 362
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.69E-8309366No hitNo description
SuperFamilySSF474592.75E-16309375IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.37311361IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.3E-16311376IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-5315362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-10317367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MENELFMNTE FPPPSEFEPP SSSSAMMLNW ALMDPNPQQD SSFLWEKSTD QQQQQSIFDS  60
ALSSLVSSPT PTNSNFSGGC GGGGGDGFII RELIGKLGNI GNHNSSREIY GGTTPMSRSA  120
LCYATPMSSP PPPSNSNSHI MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNSNL  180
PVNNNNVVNN SGKLTRVSST PALKALVSPE VAPMIPGGEF SRKRKALPKG KSKENPISTA  240
SPSPSFSKTA EKKEDWSGKG SKSSDEKGGK RRREDEDDDV EEEEGEGNKS NNTKPPEPPK  300
DYIHVRARRG QATDSHSLAE RVRREKIGER MKLLQDLVPG CNKVTGKALM LDEIINYVQS  360
LQRQVEFLSM KLSSVNDTRL EFNVDALVSK DVMIPSSNNR LHEEGLQSKS SSHHHQQLNI  420
YNNNNNSQLH PNNMMLQSPM NSLETSSLAR SFTHLPTLTQ FTDSISQYQM FSEEDLQSIV  480
GMGVAQNPNH ESQHMKLEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA to G box 5'-CACGTG-3' and to E-box 5'-CANNTG-3' (By similarity). Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000250|UniProtKB:Q8GY61, ECO:0000269|PubMed:24130508}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00036PBMTransfer from AT5G48560Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g014690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0029450.0BT002945.1 Arabidopsis thaliana clone RAFL14-96-A17 (R20245) unknown protein (At5g48560) mRNA, complete cds.
GenBankBT0056370.0BT005637.1 Arabidopsis thaliana clone U20245 unknown protein (At5g48560) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010482106.10.0PREDICTED: transcription factor bHLH78-like isoform X1
RefseqXP_019095526.10.0PREDICTED: transcription factor bHLH78-like isoform X2
SwissprotQ9FJL40.0BH078_ARATH; Transcription factor bHLH78
TrEMBLD7MM360.0D7MM36_ARALL; Uncharacterized protein
STRINGXP_010482106.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23322775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]