PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g012430.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 109aa MW: 11958.8 Da PI: 9.6218 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 250.5 | 1.1e-76 | 2 | 108 | 196 | 301 |
GAGA_bind 196 lvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeG.ydlsnpvDLkdhW 289 ++ln+v +De+t+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+ +++r+aR++grKmS++af+klL++LaaeG +dlsnpvDLkdhW Csa18g012430.1 2 VGLNQVVYDETTMPPPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPALPNKRHARVGGRKMSGSAFNKLLSRLAAEGhHDLSNPVDLKDHW 96 58*******************************************************************************88************ PP GAGA_bind 290 AkHGtnkfvtir 301 AkHGtn+++ti+ Csa18g012430.1 97 AKHGTNRYITIK 108 ***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 2.3E-35 | 1 | 108 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 2.5E-72 | 2 | 108 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
MVGLNQVVYD ETTMPPPVCS CTGVLRQCYK WGNGGWQSSC CTTTLSMYPL PALPNKRHAR 60 VGGRKMSGSA FNKLLSRLAA EGHHDLSNPV DLKDHWAKHG TNRYITIK* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g012430.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB016888 | 1e-154 | AB016888.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MDH9. | |||
GenBank | AK221752 | 1e-154 | AK221752.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL21-54-A10. | |||
GenBank | AK227246 | 1e-154 | AK227246.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL11-01-O04. | |||
GenBank | AY088564 | 1e-154 | AY088564.1 Arabidopsis thaliana clone 7878 mRNA, complete sequence. | |||
GenBank | AY380572 | 1e-154 | AY380572.1 Arabidopsis thaliana basic pentacysteine 6 (BPC6) mRNA, complete cds. | |||
GenBank | BT024874 | 1e-154 | BT024874.1 Arabidopsis thaliana At5g42520 mRNA, complete cds. | |||
GenBank | CP002688 | 1e-154 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. | |||
GenBank | EF123107 | 1e-154 | EF123107.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) gene, complete cds. | |||
GenBank | EF123108 | 1e-154 | EF123108.1 Arabidopsis thaliana GAGA-binding transcriptional activator (BBR/BPC6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006280750.1 | 8e-78 | protein BASIC PENTACYSTEINE6 isoform X2 | ||||
Refseq | XP_010481981.1 | 8e-78 | PREDICTED: protein BASIC PENTACYSTEINE6-like | ||||
Swissprot | Q8L999 | 2e-78 | BPC6_ARATH; Protein BASIC PENTACYSTEINE6 | ||||
TrEMBL | R0GR44 | 2e-76 | R0GR44_9BRAS; Uncharacterized protein | ||||
STRING | Cagra.9562s0001.1.p | 4e-77 | (Capsella grandiflora) | ||||
STRING | XP_010481981.1 | 3e-77 | (Camelina sativa) | ||||
STRING | XP_010497662.1 | 3e-77 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6169 | 26 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G42520.2 | 6e-81 | basic pentacysteine 6 |