PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g005650.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

G2-like

Protein Properties

Length: 290aa MW: 31890.6 Da PI: 7.6857

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g005650.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	104.5	6.4e-33	24	78	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LH+rFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl Csa18g005650.1 24 KPRLRWTADLHDRFVDAVAKLGGADKATPKSVLKLMGLKGLTLYHLKSHLQKYRL 78 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.2E-31	21	80	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.285	21	81	IPR017930	Myb domain
SuperFamily	SSF46689	2.33E-16	24	81	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-24	24	79	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	26	77	IPR001005	SANT/Myb domain
Pfam	PF14379	4.4E-19	130	175	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MERVNLGGLG YDNGGGVMMT RDPKPRLRWT ADLHDRFVDA VAKLGGADKA TPKSVLKLMG 60 LKGLTLYHLK SHLQKYRLGQ QQGKKQNRSD QNKENAGSSY VHFDNCSQGG ISNESRFDNG 120 HHRQSGNVPF AEAMRHQVDA QQRFQEQLEV QKRLQMRMEA QGKYLLTLLE KAQKSIPCDN 180 NNAAETDDKC HFSDFNLALS GLVGDDHKSH KATGLVTDNI SQLNGGDSSD DFRLCGGQEK 240 IETGGDAGVI KPESGFVHFD LNSKSGFDLL SSGNYGIEMK PNVIADRQP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-20	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-20	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-20	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-20	24	77	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00544	DAP	Transfer from AT5G45580	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g005650.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493777	0.0	AB493777.1 Arabidopsis thaliana At5g45580 mRNA for hypothetical protein, partial cds, clone: RAAt5g45580.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481557.1	0.0	PREDICTED: myb family transcription factor PHL11-like isoform X2
Swissprot	C0SVS4	1e-175	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	R0GD26	1e-175	R0GD26_9BRAS; Uncharacterized protein
STRING	XP_010481555.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12495	25	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	1e-167	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]