PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa18g005150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | WOX | ||||||||
Protein Properties | Length: 352aa MW: 39361.3 Da PI: 6.8763 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.9 | 1.5e-17 | 89 | 149 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++++eq+++Le+ F++ +p +ee++++ +l ++ +++V++WFqNr+ + k+ Csa18g005150.1 89 KPRWNPKPEQIRILESIFNSgIVNPPREEIQRIRIRLqeygQIGDANVFYWFQNRKSRAKH 149 89*****************99*************************************995 PP | |||||||
2 | Wus_type_Homeobox | 110.5 | 9e-36 | 88 | 150 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +++RW+P+peQi+iLe++++sG+++P++eeiqri+ +L+eyG+i+d+NVfyWFQNrk+R ++k Csa18g005150.1 88 PKPRWNPKPEQIRILESIFNSGIVNPPREEIQRIRIRLQEYGQIGDANVFYWFQNRKSRAKHK 150 579**********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.171 | 85 | 150 | IPR001356 | Homeobox domain |
SMART | SM00389 | 4.7E-7 | 87 | 154 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.98E-12 | 87 | 152 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 8.39E-8 | 88 | 150 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-6 | 89 | 149 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.3E-15 | 89 | 149 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008284 | Biological Process | positive regulation of cell proliferation | ||||
GO:0030010 | Biological Process | establishment of cell polarity | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0090451 | Biological Process | cotyledon boundary formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
MSSSSNKNWP SMFKSKPCNN NHHHQQHESG SPSYMHYSNC NISSSFSSGI YKNLHHLLHS 60 FFFDNCVYVK TCMMMIYTLY ESDRVPDPKP RWNPKPEQIR ILESIFNSGI VNPPREEIQR 120 IRIRLQEYGQ IGDANVFYWF QNRKSRAKHK LRVHHKSPKT SKKDKIISPG IDADHCFGLV 180 HQETGLFPVQ NNEMLVTQPA GYPSSVQNDL SVAQSGFGFG DFVVPVVREE GVAFPGNDES 240 LDKIPAINFY GGDGNGGGGN CFSPLPLTTN QSQERAIVFH GGENVEDCVS PDKLTIFIND 300 MLFEVAAGLF NVKEAFGNNA ILINSFGQPI LTDENGVTFQ SLQNGAVYYL I* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor, which may be involved in embryonic patterning (PubMed:14711878). May be required for basal embryo development after fertilization (PubMed:14711878). Acts partially redundantly with STIP in promoting embryonic cell division and proliferation (PubMed:17706632). Promotes cotyledon boundary formation by maintaining the symmetry in CUC genes expression domains (PubMed:22827849). {ECO:0000269|PubMed:17706632, ECO:0000269|PubMed:22827849, ECO:0000303|PubMed:14711878}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa18g005150.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in the zygote after fertilization by the transcription factor WRKY2 (PubMed:21316593). Up-regulated by CLE8 (PubMed:22427333). {ECO:0000269|PubMed:21316593, ECO:0000269|PubMed:22427333}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB006698 | 1e-152 | AB006698.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MCL19. | |||
GenBank | CP002688 | 1e-152 | CP002688.1 Arabidopsis thaliana chromosome 5 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481511.1 | 0.0 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q6X7J5 | 1e-164 | WOX8_ARATH; WUSCHEL-related homeobox 8 | ||||
TrEMBL | R0EV12 | 0.0 | R0EV12_9BRAS; Uncharacterized protein | ||||
STRING | XP_010481511.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14262 | 16 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G45980.1 | 1e-140 | WUSCHEL related homeobox 8 |
Publications ? help Back to Top | |||
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