PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa18g003450.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 294aa    MW: 33667.5 Da    PI: 5.2332
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa18g003450.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.11.4e-5261341128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                     lppGfrFhPtdeel+ +yLk+kveg ++el evi+ +d+y+++Pw+Lp k  + +++ ew+fF++rdkky++g r+nr tk+gyWkatgkd++++
  Csa18g003450.1   6 LPPGFRFHPTDEELIEYYLKRKVEGLEIEL-EVIPVIDLYSFDPWELPdKsFLPNRDMEWFFFCSRDKKYPNGFRTNRGTKAGYWKATGKDRKIT 99 
                     79****************************.99**************96435556888************************************* PP

             NAM  94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     s++++ +g +ktLvfykgrap g +++W+mheyrl
  Csa18g003450.1 100 SRSSSIIGYRKTLVFYKGRAPLGDRSNWIMHEYRL 134
                     *********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.11E-603159IPR003441NAC domain
PROSITE profilePS5100558.3966159IPR003441NAC domain
PfamPF023656.6E-297134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGSSCLPPGF RFHPTDEELI EYYLKRKVEG LEIELEVIPV IDLYSFDPWE LPDKSFLPNR  60
DMEWFFFCSR DKKYPNGFRT NRGTKAGYWK ATGKDRKITS RSSSIIGYRK TLVFYKGRAP  120
LGDRSNWIMH EYRLCDDDSS QGPPQHFKGA FVLCRVAMKT EIKTNSKIRK IPSEQTIGSG  180
ESSGFSSRVT SPSRDETMPF HSFANPVSTE TDSSNIWISP DFILDSSKDY PQIQEVASQY  240
FQQDFDFAVI GNQNMDFLAS TSLDQNKDES MQTGYWTNYG YDQTGLFGYS DFS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-48615917165NO APICAL MERISTEM PROTEIN
1ut4_B1e-48615917165NO APICAL MERISTEM PROTEIN
1ut7_A1e-48615917165NO APICAL MERISTEM PROTEIN
1ut7_B1e-48615917165NO APICAL MERISTEM PROTEIN
4dul_A1e-48615917165NAC domain-containing protein 19
4dul_B1e-48615917165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in the positive regulation of abscisic acid (ABA) responsive genes. Acts as a positive factor of ABA-mediated responses. Involved in the transcriptional activation of ABA-inducible genes in response to dehydration and osmotic stresses. Plays a positive role in both stomatal closure and water loss under dehydration stress conditions. Acts synergistically with ABF2 to activate the dehydration stress-response factor RD29A transcription. Binds to the consensus core cis-acting elements 5'-CGTA-3' and 5'-CACG-3' at the RD29A promoter (PubMed:24285786). Involved in hypocotyl graft union formation. Required for the auxin-mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:25182467). {ECO:0000269|PubMed:24285786, ECO:0000269|PubMed:25182467}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa18g003450.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), dehydration and osmotic stress. {ECO:0000269|PubMed:24285786}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0203050.0BT020305.1 Arabidopsis thaliana At5g46590 gene, complete cds.
GenBankBT0205550.0BT020555.1 Arabidopsis thaliana At5g46590 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010481438.10.0PREDICTED: NAC domain-containing protein 86-like isoform X2
SwissprotQ9LS240.0NAC96_ARATH; NAC domain-containing protein 96
TrEMBLD7MRC40.0D7MRC4_ARALL; ANAC096
STRINGXP_010481437.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21512777
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46590.10.0NAC domain containing protein 96
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]