PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa18g003200.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 475aa MW: 53717.5 Da PI: 5.6951

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa18g003200.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2.1e-12	307	352	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er RR+++N++f Lr ++P+ K++K + Le Av+YI++L Csa18g003200.1 307 NHVEAERMRREKLNHRFYALRAVVPNV-----SKMDKTSLLEDAVRYINEL 352 799*********************6.....5*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	3.6E-50	35	230	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	1.00E-13	302	353	No hit	No description
SuperFamily	SSF47459	4.84E-17	303	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	16.806	303	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.5E-16	307	374	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.5E-10	307	352	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-14	309	358	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MNTDDNLSMI EALLTSDLWP PLPPANHHLS LETTLQKRLH TVLSGTHEPW TYAIFWKPSY 60 FDLSGESVLK WSDGVYNGDD EEKTGRRLRR TIKKTIPSSP EEKERRRRVL RELNSMISGE 120 TFPVVEEDDA KDDVDDVEVT DTEWFFLVSM TWTFGNGSGL AGKAFTTYNP VWVTGSDQIY 180 GSGCDRAKQG GGLGLQTIVC IPSDNGVLEL GSTEQIRQNS DLFNKIRFLF SFEGSKDFSG 240 APTSAQFHSS IHNPNPNPVY QPIQINFSGE EFKRSSDDRM DEMEIPEMKP GKKRGRKPMH 300 GREKPLNHVE AERMRREKLN HRFYALRAVV PNVSKMDKTS LLEDAVRYIN ELKSTAENAE 360 SERNAVQNQL NELKKITGRQ NATSSVCNDD KENLSELKIE VKAMGSDVMI RVESGKRNHP 420 GARLMNALMD LELEVSHASI SVMNDLMIQQ ATVKMGLRIY EQEQLQDMLI SKIN*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MNTDDNLSMI EALLTSDLWP PLPPANHHLS LETTLQKRLH TVLSGTHEPW TYAIFWKPSY  60
FDLSGESVLK WSDGVYNGDD EEKTGRRLRR TIKKTIPSSP EEKERRRRVL RELNSMISGE  120
TFPVVEEDDA KDDVDDVEVT DTEWFFLVSM TWTFGNGSGL AGKAFTTYNP VWVTGSDQIY  180
GSGCDRAKQG GGLGLQTIVC IPSDNGVLEL GSTEQIRQNS DLFNKIRFLF SFEGSKDFSG  240
APTSAQFHSS IHNPNPNPVY QPIQINFSGE EFKRSSDDRM DEMEIPEMKP GKKRGRKPMH  300
GREKPLNHVE AERMRREKLN HRFYALRAVV PNVSKMDKTS LLEDAVRYIN ELKSTAENAE  360
SERNAVQNQL NELKKITGRQ NATSSVCNDD KENLSELKIE VKAMGSDVMI RVESGKRNHP  420
GARLMNALMD LELEVSHASI SVMNDLMIQQ ATVKMGLRIY EQEQLQDMLI SKIN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	8e-49	32	232	6	194	Transcription factor MYC3
4rqw_B	8e-49	32	232	6	194	Transcription factor MYC3
4rs9_A	8e-49	32	232	6	194	Transcription factor MYC3
4yz6_A	8e-49	32	232	6	194	Transcription factor MYC3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa18g003200.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010481407.1	0.0	PREDICTED: transcription factor bHLH28-like
Swissprot	Q9LUK7	0.0	BH028_ARATH; Transcription factor bHLH28
TrEMBL	R0G888	0.0	R0G888_9BRAS; Uncharacterized protein
STRING	XP_010481407.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13953	16	24

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G46830.1	0.0	NACL-inducible gene 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]