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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Csa17g094560.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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| Family |
Trihelix |
| Protein Properties |
Length: 413aa MW: 44984 Da PI: 6.5333 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Csa17g094560.1 | genome | CSGP | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 52.8 | 1.1e-16 | 93 | 179 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W+++ +++Li+a ++ ++ ++g lk+++W+ev++ + r+ ++ ++ +qCk++++ ++k+yk++k+ ++ + s++++f++le
Csa17g094560.1 93 CWSEEATKVLIDAWGDRFSEPGKGTLKQQHWKEVAEIVnksRQCKYPKTDIQCKNRIDTVKKKYKQEKAKIASG--DGPSKWVFFKKLE 179
7*************************************99999999**************************98..56668******98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 413 aa
Download sequence Send
to blast |
MEEDDEIQSI HSPGDSSLSP QAPPSPPILP TNDVTVAVVK KPTAASVSSQ SPSRNALALV 60
VHTPAVTGGG GGVSGNRNGR GGSGGGGGGR DDCWSEEATK VLIDAWGDRF SEPGKGTLKQ 120
QHWKEVAEIV NKSRQCKYPK TDIQCKNRID TVKKKYKQEK AKIASGDGPS KWVFFKKLES 180
LIGGSITTRA SEKAPMGGGG LVNSRSHLFK RQAKGTQVMG GGGDLKRGSD SMRWHFRKRS 240
ASETESESES DPEPEASPDS AESLPPPPQP VSYQLPKRLK VDKSEGGSGV GDVARAILGF 300
TEAYEKAETA KLKLMVELEK ERMKFAKEME LQRMQFLKTQ LEITQSNQEE EKRSRQQGGD 360
RRIVDDDDDD DDDDDNEDDD HRSVKNNGNL SYYDSDHRRH VVVIVVVVIR LG*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 79 | 89 | RGGSGGGGGGR |
| 2 | 225 | 238 | KRGSDSMRWHFRKR |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription repressor that binds specific DNA sequence such as the GT-box-like motif 5'-CGTGATT-3' in the AT2S3 promoter. Negative regulator of seed maturation genes during seed germination and seedling development. May target GT-box-containing embryonic genes by competing with the binding of transcriptional activators to this promoter region (PubMed:19155348). Contributes to the maintenance and control of seed filling (PubMed:22231199) and may repress the maturation program during early embryogenesis (PubMed:21330492). {ECO:0000269|PubMed:19155348, ECO:0000269|PubMed:21330492, ECO:0000269|PubMed:22231199}. |
