PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g093440.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

ERF

Protein Properties

Length: 214aa MW: 22752.3 Da PI: 10.1504

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g093440.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.8	6.4e-19	40	89	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp++ ++r++lg+f+ta++Aa+a++ a+++++g Csa17g093440.1 40 RYRGVRKRP-WGRYAAEIRDPVK---KTRVWLGTFDTAQQAARAYDSAAREFRG 89 59*****.******654...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	24.026	40	97	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-35	40	103	IPR001471	AP2/ERF domain
CDD	cd00018	1.03E-30	40	97	No hit	No description
Gene3D	G3DSA:3.30.730.10	7.7E-32	40	97	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	7.85E-22	40	98	IPR016177	DNA-binding domain
Pfam	PF00847	1.2E-12	40	89	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-11	41	52	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.3E-11	63	79	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MTTNVGSKPD PVVVSPPPTN PTRESGNNHN NNNNAAKEIR YRGVRKRPWG RYAAEIRDPV 60 KKTRVWLGTF DTAQQAARAY DSAAREFRGS KAKTNFPTFL ELHGNAGGGG GNNSPSCQSS 120 TVVSSSSPPK PARFVTPPPQ LELSLGGGGG GVYRRIPVTR PVYYFNMTTA FPKVTACGFQ 180 SESETSSVVD FEGGAGKISQ PLDLDLNLAP PAE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	9e-21	36	97	10	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11487705}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g093440.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF499716	4e-69	AF499716.1 Thellungiella halophila ethylene responsive element binding factor 4-like protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010479863.1	1e-155	PREDICTED: ethylene-responsive transcription factor 8-like
Swissprot	Q9MAI5	8e-76	ERF79_ARATH; Ethylene-responsive transcription factor 8
TrEMBL	R0IN88	1e-100	R0IN88_9BRAS; Uncharacterized protein
STRING	XP_010479863.1	1e-155	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53170.1	3e-52	ethylene response factor 8

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383] Cao FY, et al. Arabidopsis ETHYLENE RESPONSE FACTOR 8 (ERF8) has dual functions in ABA signaling and immunity. BMC Plant Biol., 2018. 18(1): p. 211 [PMID:30261844]