PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g093060.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 267aa    MW: 29446.5 Da    PI: 10.1614
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g093060.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.98.4e-53531841128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                     lppGfrFhPtdeelv +yLk+k+++ +l++  +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+
  Csa17g093060.2  53 LPPGFRFHPTDEELVIHYLKRKADSVPLPV-AIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIST 146
                     79****************************.88***************999999****************************************9 PP

             NAM  96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl
  Csa17g093060.2 147 gggggGNKKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 184
                     999988889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.22E-6048191IPR003441NAC domain
PROSITE profilePS5100555.8453208IPR003441NAC domain
PfamPF023659.5E-2854184IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 267 aa     Download sequence    Send to blast
MHFILLTPTL SQVSTISHYL SKKKKKKKES LRSSNQMEST DSSGGPPPPQ PNLPPGFRFH  60
PTDEELVIHY LKRKADSVPL PVAIIADVDL YKFDPWELPA KASFGEQEWY FFSPRDRKYP  120
NGARPNRAAT SGYWKATGTD KPVISTGGGG GGNKKVGVKK ALVFYSGKPP KGVKSDWIMH  180
EYRLTDNKPN HICDFGNKKN SLREQFFPPV MMMSSLNQDS GIGSSSSPSK RFNGGDCSNI  240
VSSMAATPLM QNQGGIYQLP GLNWYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A7e-665218414140Stress-induced transcription factor NAC1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12127KKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtMay encode a transcription factor involved in the elaboration of shoot apical meristems (SAM) (Probable). Together with NAC056/NARS1, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g093060.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF1233110.0AF123311.1 Arabidopsis thaliana NAC domain protein NAM mRNA, complete cds.
GenBankAY0860930.0AY086093.1 Arabidopsis thaliana clone 21243 mRNA, complete sequence.
GenBankAY0997860.0AY099786.1 Arabidopsis thaliana NAM-like protein (At1g52880) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010479815.11e-115PREDICTED: NAC domain-containing protein 18
SwissprotQ9ZNU28e-93NAC18_ARATH; NAC domain-containing protein 18
TrEMBLA0A087H0V91e-115A0A087H0V9_ARAAL; Uncharacterized protein
STRINGA0A087H0V91e-116(Arabis alpina)
STRINGXP_010479815.11e-115(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52880.13e-95NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wang YX
    Characterization of a novel Medicago sativa NAC transcription factor gene involved in response to drought stress.
    Mol. Biol. Rep., 2013. 40(11): p. 6451-8
    [PMID:24057250]
  3. Raherison ES,Giguère I,Caron S,Lamara M,MacKay JJ
    Modular organization of the white spruce (Picea glauca) transcriptome reveals functional organization and evolutionary signatures.
    New Phytol., 2015. 207(1): p. 172-87
    [PMID:25728802]
  4. Du Q,Wang H
    The role of HD-ZIP III transcription factors and miR165/166 in vascular development and secondary cell wall formation.
    Plant Signal Behav, 2015. 10(10): p. e1078955
    [PMID:26340415]
  5. Vialette-Guiraud AC, et al.
    A Conserved Role for the NAM/miR164 Developmental Module Reveals a Common Mechanism Underlying Carpel Margin Fusion in Monocarpous and Syncarpous Eurosids.
    Front Plant Sci, 2015. 6: p. 1239
    [PMID:26793217]