PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g093060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 355aa MW: 39665.6 Da PI: 9.7163 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.6e-52 | 53 | 184 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelv +yLk+k+++ +l++ +i++vd+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk+v+s+ Csa17g093060.1 53 LPPGFRFHPTDEELVIHYLKRKADSVPLPV-AIIADVDLYKFDPWELPAKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPVIST 146 79****************************.88***************999999****************************************9 PP NAM 96 .....kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+kk Lvfy+g+ pkg+k+dW+mheyrl Csa17g093060.1 147 gggggGNKKVGVKKALVFYSGKPPKGVKSDWIMHEYRL 184 999988889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.54E-65 | 48 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.583 | 53 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.9E-27 | 54 | 184 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 355 aa Download sequence Send to blast |
MHFILLTPTL SQVSTISHYL SKKKKKKKES LRSSNQMEST DSSGGPPPPQ PNLPPGFRFH 60 PTDEELVIHY LKRKADSVPL PVAIIADVDL YKFDPWELPA KASFGEQEWY FFSPRDRKYP 120 NGARPNRAAT SGYWKATGTD KPVISTGGGG GGNKKVGVKK ALVFYSGKPP KGVKSDWIMH 180 EYRLTDNKPN HICDFGNKKN SLRLDDWVLC RIYKKNNSTT TPRHHHHHQY HLDNDNHRHD 240 MMIDDDRFRH VPPSLHFPAI FSDNNDPTAI YDGGGGGNYS MNHNFASGSK QEQFFPPVMM 300 MSSLNQDSGI GSSSSPSKRF NGGDCSNIVS SMAATPLMQN QGGIYQLPGL NWYS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 7e-73 | 52 | 218 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 21 | 27 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May encode a transcription factor involved in the elaboration of shoot apical meristems (SAM) (Probable). Together with NAC056/NARS1, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g093060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF123311 | 0.0 | AF123311.1 Arabidopsis thaliana NAC domain protein NAM mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010479815.1 | 0.0 | PREDICTED: NAC domain-containing protein 18 | ||||
Swissprot | Q9ZNU2 | 1e-174 | NAC18_ARATH; NAC domain-containing protein 18 | ||||
TrEMBL | R0I6X8 | 0.0 | R0I6X8_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | XP_010479815.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM190 | 28 | 276 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52880.1 | 1e-167 | NAC family protein |