PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g089910.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 433aa MW: 48252.2 Da PI: 9.8353

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g089910.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.4	4.4e-12	369	414	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L++l+P+ ++ + a++L +Av+YIk+Lq Csa17g089910.1 369 SIAERVRRTKISERMRKLQDLVPNM----DTQTNTADMLDLAVQYIKDLQ 414 689*******************7....79****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.072	363	413	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.95E-16	366	426	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.20E-11	367	418	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.9E-15	368	424	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-13	369	419	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-9	369	414	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
CFFFSSSLSR SLFLILINLI RRVKKSHHPR RAILPPAKSF NKKITRQEER NSKATKMESE 60 FQQHHFLIHH QQHDHQHQHQ RPRNSGLIRY QSAPSSYFSN FGESIEEFLD RPTSPETERI 120 LSGFLQTTDT SNNVDSFLHH AFNSDGTEKK PPPPEVKTEE GEDTEIPAME VGDVEIPVTS 180 DSRNLSQNKK RPRDDRTPPP VNNLARHNSS PAGLFSSIDV ETAYAAVMKS MGGFGGGNVM 240 NTSNTTEASS LTPRSKLLPP VSRAMSPISE VDVKPAFSSR LPPRTLSGGF NRSFGNEGSA 300 SSKLSAIART QSGGLDQYKI KDEDSASRRP PLAHHMSLPK SLSDIEQLLS DSIPCKIRAK 360 RGCATHPRSI AERVRRTKIS ERMRKLQDLV PNMDTQTNTA DMLDLAVQYI KDLQDQVKAL 420 EDNRARCTCS SA*

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

CFFFSSSLSR SLFLILINLI RRVKKSHHPR RAILPPAKSF NKKITRQEER NSKATKMESE  60
FQQHHFLIHH QQHDHQHQHQ RPRNSGLIRY QSAPSSYFSN FGESIEEFLD RPTSPETERI  120
LSGFLQTTDT SNNVDSFLHH AFNSDGTEKK PPPPEVKTEE GEDTEIPAME VGDVEIPVTS  180
DSRNLSQNKK RPRDDRTPPP VNNLARHNSS PAGLFSSIDV ETAYAAVMKS MGGFGGGNVM  240
NTSNTTEASS LTPRSKLLPP VSRAMSPISE VDVKPAFSSR LPPRTLSGGF NRSFGNEGSA  300
SSKLSAIART QSGGLDQYKI KDEDSASRRP PLAHHMSLPK SLSDIEQLLS DSIPCKIRAK  360
RGCATHPRSI AERVRRTKIS ERMRKLQDLV PNMDTQTNTA DMLDLAVQYI KDLQDQVKAL  420
EDNRARCTCS SA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g089910.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY034941	0.0	AY034941.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.
GenBank	AY063120	0.0	AY063120.1 Arabidopsis thaliana unknown protein (At1g51140) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010479574.1	0.0	PREDICTED: transcription factor bHLH122-like
Swissprot	Q9C690	0.0	BH122_ARATH; Transcription factor bHLH122
TrEMBL	R0I6R6	0.0	R0I6R6_9BRAS; Uncharacterized protein
STRING	XP_010479574.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10547	26	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51140.1	0.0	bHLH family protein

Publications ? help Back to Top
Yang Z, et al. Stable isotope metabolic labeling-based quantitative phosphoproteomic analysis of Arabidopsis mutants reveals ethylene-regulated time-dependent phosphoproteins and putative substrates of constitutive triple response 1 kinase. Mol. Cell Proteomics, 2013. 12(12): p. 3559-82 [PMID:24043427] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Takahashi Y,Kinoshita T,Matsumoto M,Shimazaki K Inhibition of the Arabidopsis bHLH transcription factor by monomerization through abscisic acid-induced phosphorylation. Plant J., 2016. 87(6): p. 559-67 [PMID:27227462] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Takahashi Y,Ebisu Y,Shimazaki KI Reconstitution of Abscisic Acid Signaling from the Receptor to DNA via bHLH Transcription Factors. Plant Physiol., 2017. 174(2): p. 815-822 [PMID:28438792]