PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g080750.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 330aa MW: 37499 Da PI: 4.931 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.2 | 1.1e-14 | 89 | 135 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 sg+kGVr+++ +g+++AeIr p e +kr +lg+f t+e Aa+a+ + ++ Csa17g080750.1 89 SGFKGVRRRP-WGKFAAEIRNPFE---KKRKWLGTFPTEEAAAEAYQRSKR 135 79********.**********644...5**********8888888876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.2E-9 | 89 | 130 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.12E-15 | 89 | 137 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 9.35E-20 | 89 | 132 | No hit | No description |
SMART | SM00380 | 3.8E-15 | 90 | 153 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 90 | 147 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-19 | 91 | 139 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 91 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 113 | 129 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MISRREEVDI DLNVIKTVNV ICNDPDATDS SSDDDEVKTG NNSTRRRQMK PKRPKRFTSK 60 ICVQTLIKRY ENVSNSTGIK ATGSRKTSSG FKGVRRRPWG KFAAEIRNPF EKKRKWLGTF 120 PTEEAAAEAY QRSKREFDEK LALGKAEVDL VDLTKPCGVS KREEKEVKST KSSVPTRPTN 180 SKKVNKINAV EKTFCSSYVD EDEGMICKML EDPLMTSSIS DIFRDSVVGS DDIWIDNNPT 240 EFDSIFKELK LDYLEDYTTG NEQTFGFNQH AQIVSTVANI FDEADLREFN QLANDFQLED 300 FPMDDFGLLG VPDDYSWFNG TADWIYKSL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 114 | RRRPWGKFAAEIRNPFEKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g080750.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010481039.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF117-like | ||||
Swissprot | Q9M9B2 | 1e-134 | EF117_ARATH; Ethylene-responsive transcription factor ERF117 | ||||
TrEMBL | A0A178WIZ6 | 1e-144 | A0A178WIZ6_ARATH; CRF9 | ||||
STRING | XP_010481039.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16547 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G49120.1 | 1e-127 | ERF family protein |