PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g062260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 159aa MW: 17776.1 Da PI: 10.0176 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 67.3 | 4.3e-21 | 45 | 157 | 2 | 111 |
NAM 2 ppGfrFhPtdeelvveyLkkk..vegkk..leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 ppG+ ++P+d e++ L +k g + l l++ i+ v+iy+++P++L +k+k+ ++++ +f skr+k + gkr++r +k gyW+at +k Csa17g062260.1 45 PPGVNYRPKDLEVI-SLLGRKqyYLGGNrdL-LATLsIHLVNIYESNPEELSEKFKKaNDTDRFFISKRNKMGKDGKRQKRDAKGGYWHATVASK 137 9*************.6666653433333332.23335**************965554266788999999999999******************** PP NAM 91 evlskkgelvglkktLvfykg 111 ++ + ++ lvg k+ L +y g Csa17g062260.1 138 KIDA-GQGLVGYKTALDYYVG 157 **99.999***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-23 | 39 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.494 | 44 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.5E-8 | 45 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MSMPGRNKRK ERSLPEPEPE PSEIPSSSAD DHQLSSSPST RPCFPPGVNY RPKDLEVISL 60 LGRKQYYLGG NRDLLATLSI HLVNIYESNP EELSEKFKKA NDTDRFFISK RNKMGKDGKR 120 QKRDAKGGYW HATVASKKID AGQGLVGYKT ALDYYVGK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g062260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431411.1 | 3e-97 | PREDICTED: NAC transcription factor 29-like | ||||
Refseq | XP_010431419.1 | 6e-96 | PREDICTED: NAC domain-containing protein 53-like | ||||
TrEMBL | D7LVH1 | 3e-46 | D7LVH1_ARALL; Uncharacterized protein | ||||
STRING | XP_010431411.1 | 1e-96 | (Camelina sativa) | ||||
STRING | XP_010431419.1 | 2e-95 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56530.1 | 9e-38 | NAC domain containing protein 64 |