PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g062200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 169aa MW: 19304.2 Da PI: 5.1024 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 47 | 3.3e-15 | 2 | 52 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k ien+ r vtf kR++ i K +ELS LC+++v +++s++g y++ss Csa17g062200.1 2 KVIENYADRMVTFYKRKQKIYTKLSELSLLCGTDVGFLVYSNSGIPYTFSS 52 67***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 18.194 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-9 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.83E-17 | 1 | 71 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.6E-17 | 4 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-5 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.9E-5 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MKVIENYADR MVTFYKRKQK IYTKLSELSL LCGTDVGFLV YSNSGIPYTF SSPSFEVIAK 60 RFFNSEGSSS TSLLQQSNIN VQHKEKMEEL CKVYNSLLEK ADAEKQKGMA MGKAEAEVLL 120 VEKDVWWRID PTMVKDKEVL MQLLEKYEDL CEKLCDEMVA SNQIQNSP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g062200.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010480901.1 | 1e-122 | PREDICTED: MADS-box transcription factor 31-like | ||||
TrEMBL | D7LMQ2 | 4e-55 | D7LMQ2_ARALL; Uncharacterized protein | ||||
STRING | XP_010480901.1 | 1e-122 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4676 | 13 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29962.1 | 5e-50 | AGAMOUS-like 64 |