PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g042920.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family M-type_MADS
Protein Properties Length: 180aa    MW: 20154.7 Da    PI: 5.8157
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g042920.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF43.25.2e-141564150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    k+ie +  r vt+skRrngi  K +EL +LC+a+ a + +s +gk y++ 
  Csa17g042920.1 15 KKIEKDEDRLVTLSKRRNGIYTKLSELAILCGADFAFLGYSGSGKPYTFG 64
                    689*********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006621.011767IPR002100Transcription factor, MADS-box
SMARTSM004326.2E-18766IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.4E-21877IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-13929IPR002100Transcription factor, MADS-box
PfamPF003195.6E-171663IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-132944IPR002100Transcription factor, MADS-box
PRINTSPR004041.2E-134465IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MSSKKTKGKQ RIKIKKIEKD EDRLVTLSKR RNGIYTKLSE LAILCGADFA FLGYSGSGKP  60
YTFGSPSFQA VVERFLNGEA SSSSSHLQRS FFDAHHKAKI QELCELYNSL VDKAREEEAE  120
EVKAAASVEP LPEDAWWKVN PMAVTDEEES KQLLEKFEGL YDKLCDEVAV RNQREDAAA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g042920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010478370.11e-130PREDICTED: agamous-like MADS-box protein AGL29
TrEMBLD7KEP05e-84D7KEP0_ARALL; Uncharacterized protein
STRINGXP_010478370.11e-129(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46761352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29962.15e-66AGAMOUS-like 64