PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa17g042050.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 384aa MW: 42964.7 Da PI: 4.4448

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa17g042050.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99	2.9e-31	75	133	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp+++ itY++eHnh+ Csa17g042050.1 75 SDSWAWRKYGQKPIKGSPYPRGYYRCSSTkGCPARKQVERSRDDPTMILITYTSEHNHP 133 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.4E-32	67	135	IPR003657	WRKY domain
PROSITE profile	PS50811	32.294	69	135	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-27	70	135	IPR003657	WRKY domain
SMART	SM00774	5.6E-38	74	134	IPR003657	WRKY domain
Pfam	PF03106	2.2E-26	76	133	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 384 aa Download sequence Send to blast
MKRGLDQMTR SYNDHESSQE TGPDSPNSST FNDMKALISS HSPKRSRRSV EKRVVNVPMK 60 ALEGSRHKGD TTPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSTKGCPARK QVERSRDDPT 120 MILITYTSEH NHPWPLTSSS RNGPKTKPEP KPEPEPEVER EVEPEVEEED NKFMVLGREI 180 ETTPSCVDEF AWFTEMETTS STILESPIFS SEKKTAVSAA ADDVAVFFPM GEEDESLFAD 240 LGELPECSVV FRHRSSVVGN GPKTKPEPKP EPEPEVEREV EPEVEEEDNK FMVLGREIET 300 TPSCVDEFAW FTEMETTSST ILESPIFSSE KKTAVSAAAD DVAVFFPMGE EDESLFADLG 360 ELPECSVVFR HRSSVVGSQV EIF*

Sequence ? help Back to Top

Protein Sequence Length: 384 aa Download sequence Send to blast

MKRGLDQMTR SYNDHESSQE TGPDSPNSST FNDMKALISS HSPKRSRRSV EKRVVNVPMK  60
ALEGSRHKGD TTPPSDSWAW RKYGQKPIKG SPYPRGYYRC SSTKGCPARK QVERSRDDPT  120
MILITYTSEH NHPWPLTSSS RNGPKTKPEP KPEPEPEVER EVEPEVEEED NKFMVLGREI  180
ETTPSCVDEF AWFTEMETTS STILESPIFS SEKKTAVSAA ADDVAVFFPM GEEDESLFAD  240
LGELPECSVV FRHRSSVVGN GPKTKPEPKP EPEPEVEREV EPEVEEEDNK FMVLGREIET  300
TPSCVDEFAW FTEMETTSST ILESPIFSSE KKTAVSAAAD DVAVFFPMGE EDESLFADLG  360
ELPECSVVFR HRSSVVGSQV EIF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-20	75	135	17	79	Disease resistance protein RRS1
5w3x_D	1e-20	75	135	17	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa17g042050.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493485	0.0	AB493485.1 Arabidopsis thaliana At1g29280 mRNA for hypothetical protein, partial cds, clone: RAAt1g29280.
GenBank	AF452173	0.0	AF452173.1 Arabidopsis thaliana WRKY transcription factor 65 (WRKY65) mRNA, complete cds.
GenBank	BT026354	0.0	BT026354.1 Arabidopsis thaliana At1g29280 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010460704.1	1e-163	PREDICTED: probable WRKY transcription factor 65 isoform X1
Swissprot	Q9LP56	1e-157	WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBL	A0A384LK50	1e-154	A0A384LK50_ARATH; WRKY65
TrEMBL	Q0V866	1e-154	Q0V866_ARATH; At1g29280
STRING	XP_010460704.1	1e-162	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5383	28	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29280.1	1e-138	WRKY DNA-binding protein 65

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796]