PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g039350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 254aa MW: 28792.4 Da PI: 9.4294 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 110.2 | 2.3e-34 | 15 | 155 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee...vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk...... 79 lp+G++F+P+d+e++ +L++kv+++k ++ e +++ +i++++P++Lp v+++ + +fF++ +k+y+tg+rk+r+++ Csa17g039350.1 15 LPAGVKFDPSDKEIL-MHLEAKVSSDKrklhplID--EfipTLEGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVStdeegh 105 799***********9.89*****999956644322..22222333336**********.566677888******************733345444 PP NAM 80 sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v+s ++ + g kk+Lv+y gr++k+ekt+Wvmh+y+l Csa17g039350.1 106 ETRWHKTGKTRPVMS-QSGEAGFKKILVLYtnYGRQKKPEKTNWVMHQYHL 155 788************.8889**********6658***************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.96E-36 | 9 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.866 | 15 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-15 | 16 | 155 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MKFDKVGSIK DLPSLPAGVK FDPSDKEILM HLEAKVSSDK RKLHPLIDEF IPTLEGENGI 60 CYTHPEKLPG VSKDGQVRHF FHRPSKAYTT GTRKRRKVST DEEGHETRWH KTGKTRPVMS 120 QSGEAGFKKI LVLYTNYGRQ KKPEKTNWVM HQYHLGNSED EKDGEPVLSK VFYQTQPRQC 180 GNSTEPKPKN LVNLNRFSYE NTQTGFGYEH GGKSEEASQV IRELVVHEGD GSCSFLRFTC 240 DASKGKESFM KNQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers. Is a direct target of SND1. {ECO:0000269|PubMed:18952777}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00165 | DAP | Transfer from AT1G28470 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g039350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY086476 | 0.0 | AY086476.1 Arabidopsis thaliana clone 25342 mRNA, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010478220.1 | 0.0 | PREDICTED: NAC domain-containing protein 10 | ||||
Swissprot | F4HY61 | 1e-178 | NAC10_ARATH; NAC domain-containing protein 10 | ||||
TrEMBL | R0GQV5 | 1e-180 | R0GQV5_9BRAS; Uncharacterized protein | ||||
STRING | XP_010478220.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2012 | 28 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28470.1 | 1e-180 | NAC domain containing protein 10 |