PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g035220.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 130aa    MW: 15010.1 Da    PI: 8.4933
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g035220.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.46.9e-05751121355
                     HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R+ i++++eeL+ + P++   p++ ++  ++L  ++eY+++Lq
  Csa17g035220.2  75 RELIRTKLEELKAVTPNC---PQTDVN--AMLDCTIEYVRHLQ 112
                     66799************9...777777..9************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.21662111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.006668117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-574113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.4E-674114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
MNNDEEFLRL WLERVNSLAD PEAHSNVRRI NNEGGEENAR QKRPAESKSD GKKSRVKRQC  60
ATKSPDELLA KEMKRELIRT KLEELKAVTP NCPQTDVNAM LDCTIEYVRH LQLAILFIAF  120
HEYVRNTKM*
Functional Description ? help Back to Top
Source Description
UniProtRequired during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g035220.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477948.12e-92PREDICTED: transcription factor MEE8-like isoform X2
SwissprotQ9FRI02e-36MEE8_ARATH; Transcription factor MEE8
TrEMBLR0ILF61e-45R0ILF6_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010477948.11e-91(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25310.11e-38bHLH family protein