PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G25310.1 | ||||||||
Common Name | BHLH108, EN132, F4F7.30, MEE8 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | bHLH | ||||||||
Protein Properties | Length: 145aa MW: 17020.4 Da PI: 9.6551 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 16.6 | 1.5e-05 | 75 | 111 | 9 | 50 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveY 50 ++RR+ri+ +e+L+e+ P++ p+ +iL ++eY AT1G25310.1 75 KKKRRERIRRQLETLKEITPNC---PQSD--INAILDCVIEY 111 59*******************8...3333..33677777776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.261 | 66 | 115 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.4E-6 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.1E-7 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 145 aa Download sequence Send to blast |
MNKDEVFLRQ WFEILYSLTN PEANSDLRRI NNEKGVEKVG QKRSAESRRE GKKKRVKTQC 60 VIKSSDKSDH DTLLKKKRRE RIRRQLETLK EITPNCPQSD INAILDCVIE YTNNLRLAHY 120 KGSQGICDDW RLFTEAGAVL YYIDT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 74 | 78 | KKKRR |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 18395638 | 0.0 | ||||
Expression Atlas | AT1G25310 | - | ||||
AtGenExpress | AT1G25310 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required during early embryo development, for the endosperm formation. {ECO:0000269|PubMed:15634699}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G25310.1 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G25310 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC079374 | 1e-124 | AC079374.4 Arabidopsis thaliana chromosome 1 BAC F4F7 genomic sequence, complete sequence. | |||
GenBank | CP002684 | 1e-124 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_173902.1 | 1e-104 | basic helix-loop-helix (bHLH) DNA-binding family protein | ||||
Swissprot | Q9FRI0 | 1e-105 | MEE8_ARATH; Transcription factor MEE8 | ||||
TrEMBL | A0A178W871 | 6e-70 | A0A178W871_ARATH; MEE8 | ||||
STRING | AT1G25310.1 | 1e-104 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17061 | 6 | 8 |
Link Out ? help Back to Top | |
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Phytozome | AT1G25310.1 |
Entrez Gene | 839115 |
iHOP | AT1G25310 |
wikigenes | AT1G25310 |
Publications ? help Back to Top | |||
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