PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa17g034220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | B3 | ||||||||
Protein Properties | Length: 1120aa MW: 127018 Da PI: 10.1186 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 49.9 | 5.7e-16 | 14 | 99 | 1 | 95 |
EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 ffk l ++++ l +p f++++ +g + ++kt +l++ sg +W vk+ ++ + lt+GW++F++a++L++gD+vvF+++g++ f +v+ Csa17g034220.1 14 FFKPL--LPGFRTH-LDIPVAFFSKYvEGRNDQNKTAKLRSdASGITWLVKM--DGLK----LTDGWEDFASAHDLRTGDIVVFRHEGEMVF--HVT 99 66777..6677777.99**********77778999****9989*********..6666....***********************9998888..665 PP | |||||||
2 | B3 | 66.2 | 4.9e-21 | 155 | 247 | 6 | 99 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ l+++rl +p +f +++g++k ++k++ l +e+grsW++ l ++k++ r++ ++GW++F++ang+ +g +Fkl++ +++ +v++++r Csa17g034220.1 155 VTAWGLSNDRLNIPLPFGRSNGLNKMRGKKIYLHNEEGRSWKLSLEHDKTGIRTYVKSGWRRFCDANGISQGQKHTFKLVR-RSAPPVIRLCRP 247 6777899************************************************************************98.67779*999985 PP | |||||||
3 | B3 | 65.7 | 6.8e-21 | 270 | 360 | 6 | 98 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++++l++++l+lp++f++ hg++k++s ++l++e+g +W + l+++k+ + ++l+kGW +F++ ng+k+gD++ Fkl+g + +e+v++++ Csa17g034220.1 270 VSPSSLSNDQLYLPRSFVSLHGLEKRCS-VIILKNEQGSKWPLVLKHTKSINLTYLKKGWTSFCDFNGIKVGDSFKFKLSG-TWEEPVLSLCP 360 67899999****************9998.999*************99999999**************************98.77788998886 PP | |||||||
4 | B3 | 65.6 | 7.4e-21 | 448 | 539 | 7 | 99 |
.-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++ +l+s+r ++p +fa+ +g++k + k++ l +e+grsW++ l ++k++ +++l++GW++F++ang+ +g +Fkl++ +++ +v++++r+ Csa17g034220.1 448 SAWALRSDRQYIPITFARFNGLNKMRCKKIYLHNEEGRSWKLGLEHDKTGMHTYLRSGWRRFCSANGISQGQQHTFKLVR-KSAPPVIRLYRS 539 5678899**********************************************************************998.888899999875 PP | |||||||
5 | B3 | 63.5 | 3.3e-20 | 566 | 650 | 10 | 98 |
HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +l++++ +lp++f+ ++g++k++s +++l++e+g +W + l + ++++++l+kGW++F++ n++k+gD++ Fkl+g + +e+v++++ Csa17g034220.1 566 SLSNDLQYLPRNFVISNGLDKRCS-EIVLKNEEGIKWPLVL--KHYKSATYLKKGWSSFCQVNRIKAGDSFKFKLVG-TWKEPVLSLCP 650 6788999**************998.****************..999999**************************99.78888999886 PP | |||||||
6 | B3 | 67.3 | 2.1e-21 | 743 | 826 | 6 | 90 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 +++++l+++rl+lp +f +++g++k ++k+++l +e+grsW+++l+y+k + +++ ++GWk+F++ang+ +g +Fkl++r ++ Csa17g034220.1 743 VTASSLRNDRLYLPLSFERSNGLDKMSGKKIVLLNEEGRSWKLNLSYNKAGMHTYVRSGWKSFCDANGMSQGQQYTFKLVRR-TA 826 68899*************************************************************************9985.44 PP | |||||||
7 | B3 | 63.9 | 2.6e-20 | 854 | 943 | 6 | 97 |
..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 +++++l+++ l+l ++f++++g++k ++ ++tl++e+gr+W++ l++ + + +++++GW +F+++ngLk++D++ Fkl++ +++++ ++++ Csa17g034220.1 854 VSASSLNKDKLYLWRSFVSSNGLDKGCN-KMTLKNEWGREWTLVLKHYESIRFTIIKRGWTSFCQDNGLKARDSFKFKLVE-TGENPILSLC 943 5678889999**************9886.****************99999999*************************998.6777888777 PP | |||||||
8 | B3 | 60.7 | 2.4e-19 | 1019 | 1115 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f++ +++ +++ ++ l lp+ f++ +g++k ++++tl ++g W v l +kk g++ ++kGWk+F++a+g+k+g++++++l++++e+++v Csa17g034220.1 1019 FVTLTLTQSAFHNSKLFLPRGFTKVNGINK--PRKITLLGQDGVIWVVDLYQEKKCGTMRFGKGWKQFCEAQGVKVGESFMLELIWEDEASPV 1109 667778899999999********9999995..558***************66888888********************************9** PP EEEE-S CS B3 94 vkvfrk 99 +k++ k Csa17g034220.1 1110 LKFCTK 1115 **9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.9E-21 | 9 | 106 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.14E-19 | 10 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.323 | 11 | 104 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.23E-15 | 12 | 99 | No hit | No description |
SMART | SM01019 | 8.3E-23 | 14 | 104 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.6E-10 | 21 | 96 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.9E-17 | 143 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.96E-15 | 144 | 245 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.057 | 150 | 248 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.9E-23 | 151 | 248 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.7E-19 | 155 | 246 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 4.08E-13 | 160 | 246 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 3.1E-20 | 257 | 360 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.35E-20 | 261 | 361 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.987 | 265 | 361 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.47E-17 | 265 | 350 | No hit | No description |
SMART | SM01019 | 1.4E-23 | 266 | 362 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.5E-20 | 270 | 360 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.0E-16 | 435 | 534 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.22E-15 | 438 | 542 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.142 | 442 | 540 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.2E-23 | 443 | 540 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.2E-19 | 447 | 539 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.97E-13 | 452 | 538 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 6.5E-19 | 550 | 651 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.71E-18 | 553 | 655 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 13.521 | 557 | 651 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-25 | 558 | 652 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.3E-18 | 565 | 650 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.83E-14 | 573 | 640 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 2.7E-18 | 731 | 830 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.82E-17 | 734 | 832 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.79 | 738 | 836 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 1.20E-15 | 738 | 825 | No hit | No description |
SMART | SM01019 | 2.5E-26 | 739 | 836 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.4E-20 | 743 | 831 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.3E-19 | 842 | 944 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.87E-19 | 844 | 947 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.53E-18 | 849 | 944 | No hit | No description |
PROSITE profile | PS50863 | 13.281 | 849 | 945 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-27 | 850 | 946 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.0E-20 | 854 | 944 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.4E-19 | 1012 | 1114 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.67E-20 | 1016 | 1114 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.01E-14 | 1018 | 1104 | No hit | No description |
Pfam | PF02362 | 1.5E-18 | 1019 | 1115 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-22 | 1019 | 1116 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.789 | 1019 | 1116 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009507 | Cellular Component | chloroplast | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1120 aa Download sequence Send to blast |
MADQSLHSPI KPHFFKPLLP GFRTHLDIPV AFFSKYVEGR NDQNKTAKLR SDASGITWLV 60 KMDGLKLTDG WEDFASAHDL RTGDIVVFRH EGEMVFHVTA LGPSCCEIQY TSSSSHNIND 120 DDQTNTVSRN GSRVKKNPRK KVESSSNHSR FVANVTAWGL SNDRLNIPLP FGRSNGLNKM 180 RGKKIYLHNE EGRSWKLSLE HDKTGIRTYV KSGWRRFCDA NGISQGQKHT FKLVRRSAPP 240 VIRLCRPKSR PKQRSESESP SDHSCFEGSV SPSSLSNDQL YLPRSFVSLH GLEKRCSVII 300 LKNEQGSKWP LVLKHTKSIN LTYLKKGWTS FCDFNGIKVG DSFKFKLSGT WEEPVLSLCP 360 AEANRAKTPL KCSEGSDDIN PEESEEDKNI SQECLEIKKR KYRSRCRASV ENMDDDQTNI 420 GKSSRVKKNP RKKVESSSNH SRFVAKVSAW ALRSDRQYIP ITFARFNGLN KMRCKKIYLH 480 NEEGRSWKLG LEHDKTGMHT YLRSGWRRFC SANGISQGQQ HTFKLVRKSA PPVIRLYRSK 540 PKPKQTSETE SASDNSCFEG FVDPLSLSND LQYLPRNFVI SNGLDKRCSE IVLKNEEGIK 600 WPLVLKHYKS ATYLKKGWSS FCQVNRIKAG DSFKFKLVGT WKEPVLSLCP TESNREKNPS 660 KCSGGSDDVK PEESEEESNE DKNISQHCLG IKKRKYQSRC KASVENMDDD QTNIVTGNSS 720 RVKKSPRKTV ESSSDHLSFV GNVTASSLRN DRLYLPLSFE RSNGLDKMSG KKIVLLNEEG 780 RSWKLNLSYN KAGMHTYVRS GWKSFCDANG MSQGQQYTFK LVRRTAPPVL RLYLAKHRPK 840 PESSSQHSYF VGSVSASSLN KDKLYLWRSF VSSNGLDKGC NKMTLKNEWG REWTLVLKHY 900 ESIRFTIIKR GWTSFCQDNG LKARDSFKFK LVETGENPIL SLCPADSNRD KTPLEYAKGI 960 DNVKSLSSSP SSGDDSSRSK KSEDESIEDK NISQDCLEIK KRKYCLNCRA SSSYTPNRFV 1020 TLTLTQSAFH NSKLFLPRGF TKVNGINKPR KITLLGQDGV IWVVDLYQEK KCGTMRFGKG 1080 WKQFCEAQGV KVGESFMLEL IWEDEASPVL KFCTKVNSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa17g034220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010477830.1 | 0.0 | PREDICTED: B3 domain-containing protein REM17-like isoform X2 | ||||
Swissprot | Q84WP3 | 0.0 | REM17_ARATH; B3 domain-containing protein REM17 | ||||
TrEMBL | A0A1P8AVZ8 | 0.0 | A0A1P8AVZ8_ARATH; Transcriptional factor B3 family protein | ||||
STRING | XP_010477828.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5781 | 16 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26680.1 | 0.0 | B3 family protein |
Publications ? help Back to Top | |||
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