PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa17g029110.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family B3
Protein Properties Length: 297aa    MW: 33340 Da    PI: 6.9906
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa17g029110.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-151597294
                    EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3  2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                    fk l     + s  l++p kf + +  g   +e+kt+ l++  s  sW+v++  ++++    lt GWkeF+ a++L++gD++vF++dg   f  ++
  Csa17g029110.1 15 FKPL--LPGFDSF-LTIPVKFHSVYleG-R-NEGKTVELRSdASEISWKVEM--EGRK----LTVGWKEFATAHDLQVGDVIVFRHDGALVF--HI 97
                    5555..4455555.9*******999744.3.46789999986888*******..8888....***********************8774444..44 PP
2B365.39.5e-21188286198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvv 94 
                     f++ + ++++l+++rl lpk+f++ + +k+ ++k++tl d++g++W vkl ++k+  ++ l+ G keF kang+k+ +++vF+++++ +++ + +
  Csa17g029110.1 188 FVTLTATPSSLRNSRLHLPKNFVKVNRMKNLGGKKITLLDKHGKEWPVKLVMEKGNTQMRLGLGLKEFFKANGIKAHESLVFEFVWEdKTTLPIL 282
                     677788999*****************999999********************99999****************************9977777888 PP

                     EEE- CS
              B3  95 kvfr 98 
                     ++++
  Csa17g029110.1 283 QICS 286
                     8876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.34E-219109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-219105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2111103IPR003340B3 DNA binding domain
CDDcd100171.33E-1912100No hitNo description
SMARTSM010191.6E-2114103IPR003340B3 DNA binding domain
PfamPF023623.9E-112595IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.8E-19181282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-20187282IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.775188287IPR003340B3 DNA binding domain
CDDcd100176.48E-19188275No hitNo description
SMARTSM010191.5E-23188288IPR003340B3 DNA binding domain
PfamPF023624.5E-20188286IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MADPVLQPPT NPHFFKPLLP GFDSFLTIPV KFHSVYLEGR NEGKTVELRS DASEISWKVE  60
MEGRKLTVGW KEFATAHDLQ VGDVIVFRHD GALVFHITCF GPSCCEIQYV QTCDHDDNLD  120
DDDQENIRNL SMKQSLKTEP ESSIDEDKDY MELKSVSTKD CNKGKRNKSG DSSQKVPSSS  180
SSASEGRFVT LTATPSSLRN SRLHLPKNFV KVNRMKNLGG KKITLLDKHG KEWPVKLVME  240
KGNTQMRLGL GLKEFFKANG IKAHESLVFE FVWEDKTTLP ILQICSNLPC YSELVA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa17g029110.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010477477.10.0PREDICTED: B3 domain-containing protein REM7-like
SwissprotQ8H2D02e-79REM7_ARATH; B3 domain-containing protein REM7
TrEMBLA0A087GIQ62e-96A0A087GIQ6_ARAAL; Uncharacterized protein
STRINGXP_010477477.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31660.19e-79B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]